Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq69221 84.2 2e-11 seq55416 84.2 2e-11 seq111813 82.4 7e-11 >seq69221 Length=10640 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 |||||||||||| | ||| || || || || ||||| ||||| || |||||||||||| Sbjct 5878 GATAAAGAAGGTATCCCCCCTGACCAGCAGAGGCTTATATTTGCTGGTAAACAACTGGAA 5937 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||| | |||| |||| || || || || || || ||||| || |||||| | || || Sbjct 5938 GATGGTAGAACTTTGGCAGACTATAACATCCAAAAAGAATCAACACTTCACCTTGTTTT 5996 >seq55416 Length=9261 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | || ||||| || || || || ||||| || |||||| ||||| Sbjct 4043 GACAAAGAAGGCATACCTCCTGATCAGCAGAGGCTAATATTTGCCGGTAAACAATTGGAA 3984 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| |||| ||||||||||| ||||| ||||| || |||||| | || ||| Sbjct 3983 GATGGTAGAACCTTGGCAGATTACAATATCCAGAAAGAATCAACACTTCACCTTGTTTTA 3924 Query 29175 CGATTACGAGGAGG 29188 || | | ||||| Sbjct 3923 AGACTTAGGGGAGG 3910 >seq111813 Length=4153 Score = 82.4 bits (90), Expect = 7e-11 Identities = 142/205 (69%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| | ||||| | | ||||| || || ||| ||| ||| | | Sbjct 1557 AATGCAGATTTTCGTGAAAACTCTTGCTGGCAAGACGATAACCCTTGAAGTTGAAAGCTC 1498 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | | | | ||| ||||| ||||||||||| | ||| || || Sbjct 1497 AGACACTATCGACAACGTCAAGGCCAAAATCTAAGATAAAGAAGGGATCCCCCCCGAGCA 1438 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTAT-GGCCGATTACA 29139 ||| || || ||||||| || || |||||||||||| || ||| | ||| ||||||| Sbjct 1437 GCAACGATTTTTCTTTGCTGGGAAGCAACTGGAAGATGGCAGAACACTAGGCAGATTACA 1378 Query 29140 ATATTCAGAAGGAATCTACTCTTCA 29164 ||||| |||||||| || ||||| Sbjct 1377 GCATTCAAAAGGAATCCACCCTTCA 1353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427699154452415