Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq109031 152 4e-32 seq70367 125 6e-24 seq99159 114 1e-20 seq117762 105 6e-18 seq95628 98.7 8e-16 seq111813 96.9 3e-15 >seq109031 Length=8095 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || |||||||| ||||||| ||||||||| ||||||||||||||||| ||||||| Sbjct 305 TTCCACCACGCAGCCTAAGCACCAGATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCG 246 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||| || | || || ||||||||||| ||| |||| || |||||||||||| | Sbjct 245 CCAAAGTCCTACCATCTTCTAGCTGTTTGCCGGCAAAAATCAGCCTCTGCTGGTCCGGTG 186 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| ||||| ||||| | ||| || || | |||| Sbjct 185 GGATTCCCTCCTTGTCCTGTATCTTAGCCTTCACATTATCGATCGTGTCCGAGCTCTCCA 126 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || ||||||||||| || || |||||||| || ||||| Sbjct 125 CTTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 77 >seq70367 Length=2979 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || ||||| || |||| ||||| || ||||| || |||||||| ||||||||| Sbjct 284 CCACCACGGAGCCTCAGGACCAAGTGCAAGGTCGACTCTTTCTGAATGTTGTAGTCCGCC 225 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| || | ||||| ||||| || || ||| | ||||| |||||||| ||| || Sbjct 224 AAGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGATCCGGTGGA 165 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| |||||| ||||| | | | | ||| || | ||| Sbjct 164 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCGACC 105 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| |||||||| || || | || |||||||| || ||||| Sbjct 104 TCAAGGGTGATGGTCTTCCCTGTAAGGGTCTTGACAAAGATCTGCAT 58 >seq99159 Length=5808 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || ||||||| || | ||||| ||| | ||| |||||||| ||||| || |||||||| Sbjct 1579 CCTCCTCGCAACCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCCGCT 1638 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | | ||||| ||||| ||||| ||| |||| | |||||||||||| ||| Sbjct 1639 AGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGT 1698 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||||||||| ||||| |||||| | | | || || ||| Sbjct 1699 ATCCCTTCCTTGTCTTGAATCTTAGCTTTCACATTATCAATTGTGTCCGAACTCTCAACC 1758 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 |||| ||| ||||| ||||| || | || |||||||| || |||||| Sbjct 1759 TCCAGGGTTATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATT 1806 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || | ||||||||||||| || | |||| |||||||| ||||| ||||| | Sbjct 1805 TTCCACCCCTTAGCCTGAGCACCAAGTGGAGAGTGCTTTCCTTTTGGATGTTGTAGTCGG 1864 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | || ||| | | || || ||||| ||||| || |||| | |||||||| || | Sbjct 1865 CAAGTGTTCGTCCATCATCGAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGAG 1924 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||| ||||| || |||||| || || | | | | ||||| | ||| Sbjct 1925 GAATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCTATGGTATCGGAGCTCTCAA 1984 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 1985 CCTCAAGAGTAATGGTCTTTCCAGTTAAGGTTTTAACAAAGATTTGCAT 2033 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| || | ||| ||||| || |||||||| || || || || || || | || Sbjct 2050 AGGACCAGGTGGAGAGTAGACTCTTTCTGAATGTTGTAATCAGCAAGAGTGCGGCCATCT 2109 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || || ||| | || | |||||||||||| ||| | ||| |||||||| Sbjct 2110 TCGAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 2169 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| || || | | ||| || || |||| ||| | || || ||| Sbjct 2170 TGAATCTTGGCCTTAACATTGTCGATGGTGTCGGAACTCTCCACTTCGAGCGTGATTGTC 2229 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| ||||| || || ||||| |||||||| Sbjct 2230 TTGCCCGTTAAGGTCTTAACAAAGATTTGCAT 2261 >seq117762 Length=309 Score = 105 bits (116), Expect = 6e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | ||| |||| ||| | ||||| ||||| || ||||| || || ||| Sbjct 28 CCACCACGGAGACGGAGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 87 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | | ||||| ||||| ||||| ||| | || | |||||||||||| ||| Sbjct 88 AAGGTGCGTCCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGA 147 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTC-CG- 21126 | ||| |||||||| |||||| || || | | | | || | ||| |||| || Sbjct 148 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGT--CCGAGCTCTCGA 205 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||| | || |||||||||||||| | || ||||| || |||||||| Sbjct 206 CTTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 254 >seq95628 Length=1400 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| | ||| ||||||| |||| ||||||||||| || ||||| || || ||| Sbjct 233 CCTCCTCTTAACCTCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 174 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | ||||| ||||| || || ||| | || | |||||||| ||| ||| Sbjct 173 AACGTACGACCATCCTCGAGCTGCTTCCCGGCAAAGATTAACCTCTGCTGATCCGGGGGA 114 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| ||||| | | ||| || ||| | || Sbjct 113 ATCCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCGTGTCAGAGCTTTCAACC 54 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||| ||||| | || ||||| || |||||||| Sbjct 53 TCCAAGGTGATGGTCTTCCCGGTCAGTGTCTTGACGAAGATTTGCAT 7 >seq111813 Length=4153 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||| | || |||||||| || ||||| ||||| || || || | | || Sbjct 1116 AGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGCGTCCAGCCATCT 1175 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || ||||| || |||||| | || || | |||||||||| || | |||||||||||| Sbjct 1176 TCGAGCTGCTTACCCGCAAATATCAGCCGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCC 1235 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||| |||||| | | | | || || | |||| |||| || |||||| Sbjct 1236 TGAATCTTGGCTTTCACATTGTCAATTGTGTCGGAGCTCTCCACCTCCAAAGTGATGGTC 1295 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || || || || || |||| || || |||||| Sbjct 1296 TTTCCAGTCAAAGTCTTGATGAAAATCTGCATT 1328 Score = 82.4 bits (90), Expect = 6e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 20965 GCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCT 21024 |||||| |||| |||| ||||||| || |||||||| || |||||||| | | |||| Sbjct 916 GCACCAGGTGCAGAGTGTACTCCTTCTGTATGTTATAATCTGCCAGGGTGCGCCCATCCT 975 Query 21025 CCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 ||||||| || || ||| | || || | |||||| ||| || | |||||||| || Sbjct 976 CCAGCTGCTTCCCGGCAAAGATGAGCCGCTGCTGATCCGGTGGTATCCCTTCCTTATC 1033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421631389375988