Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq111813 87.8 1e-12 seq69221 84.2 2e-11 seq55416 84.2 2e-11 >seq111813 Length=4153 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| | ||||| | | ||||| || || ||| ||| ||| | | Sbjct 1557 AATGCAGATTTTCGTGAAAACTCTTGCTGGCAAGACGATAACCCTTGAAGTTGAAAGCTC 1498 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | | ||||| ||||| ||||||||||| | ||| || || Sbjct 1497 AGACACTATCGACAACGTCAAGGCCAAAATCTAAGATAAAGAAGGGATCCCCCCCGAGCA 1438 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTAT-GGCCGATTACA 25212 ||| || || ||||||| || || ||| |||||||| || ||| | ||| ||||||| Sbjct 1437 GCAACGATTTTTCTTTGCTGGGAAGCAACTGGAAGATGGCAGAACACTAGGCAGATTACA 1378 Query 25213 ATATTCAAAAGGAATCTACTCTTCA 25237 |||||||||||||| || ||||| Sbjct 1377 GCATTCAAAAGGAATCCACCCTTCA 1353 >seq69221 Length=10640 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 |||||||||||| | ||| || || || || ||||| ||||| || |||||| ||||| Sbjct 5878 GATAAAGAAGGTATCCCCCCTGACCAGCAGAGGCTTATATTTGCTGGTAAACAACTGGAA 5937 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTT 25246 ||| | |||| |||| || || || || ||||| ||||| || |||||| | || || Sbjct 5938 GATGGTAGAACTTTGGCAGACTATAACATCCAAAAAGAATCAACACTTCACCTTGTTTT 5996 >seq55416 Length=9261 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | || ||||| || || || || ||||| || |||||||||||| Sbjct 4043 GACAAAGAAGGCATACCTCCTGATCAGCAGAGGCTAATATTTGCCGGTAAACAATTGGAA 3984 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| |||| ||||||||||| || || ||||| || |||||| | || ||| Sbjct 3983 GATGGTAGAACCTTGGCAGATTACAATATCCAGAAAGAATCAACACTTCACCTTGTTTTA 3924 Query 25248 CGATTACGAGGAGG 25261 || | | ||||| Sbjct 3923 AGACTTAGGGGAGG 3910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410186031554102