Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq99159 120 3e-22 seq117762 114 1e-20 seq111813 100 3e-16 seq95628 100 3e-16 seq70367 98.7 1e-15 >seq99159 Length=5808 Score = 120 bits (132), Expect = 3e-22 Identities = 151/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| || || ||||| || |||||| |||| || ||| | | Sbjct 2717 ATGCAGATCTTCGTGAAAACCCTAACAGGCAAGACAATCACCCTCGAGGTGGAAAGCTCA 2658 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| ||||| | ||||| || || ||||| ||||||| Sbjct 2657 GACACAATCGATAACG-TAAAGGCTAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCA 2599 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| | | |||| ||||||||||| || || || | |||||||| |||||||| Sbjct 2598 GCAAAGGTTGATCTTTGCGGGCAAACAACTCGAAGATGGTCGCACCCTTGCAGACTACAA 2539 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 ||| ||||||||| | || || ||| Sbjct 2538 CATACAGAAGGAGTCTACCCTCCAT 2514 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || ||||||||||||||||| ||| | || || || | Sbjct 1806 AATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATAACCCTGGAGGTTGAGAGTTC 1747 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | || | || |||| ||||| || || || ||| ||||||| Sbjct 1746 GGACACAATTGATAATGTGAAAGCTAAGATTCAAGACAAGGAAGGGATACCCCCGGACCA 1687 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | || | || ||||| ||||| || || | ||||| || |||||||| Sbjct 1686 GCAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGACGCACTCTAGCGGACTACAA 1627 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||||||| | || || ||||| |||||||| ||| | || || Sbjct 1626 TATTCAGAAGGAGTCGACTCTTCATCTGGTGTTGCGGTTGCGAGGAGG 1579 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || || || || || ||| | || || || || Sbjct 2489 ATGCAGATCTTCGTTAAGACCCTAACTGGGAAGACAATTACCCTTGAAGTTGAGAGTTCC 2430 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| |||||||| ||| | || || Sbjct 2429 GACACCATCGACAACG-TAAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCA 2371 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| | | |||| |||||| || ||||| || |||| ||||| || |||||||| Sbjct 2370 GCAAAGGTTGATCTTCGCGGGAAAGCAGCTTGAGGACGGCCGCACTCTTGCGGACTACAA 2311 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || || || Sbjct 2310 CATCCAGAAGGAGTCTACTCTCCA 2287 >seq117762 Length=309 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || ||||| |||||||| | || ||||| | | Sbjct 254 ATGCAAATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTTGAAGTCGAGAGCTCG 195 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || |||| |||||| || || | ||||| |||||||| ||| ||||||| Sbjct 194 GACACGATTGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 136 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || ||||| ||||| || || | |||||| | || ||||| Sbjct 135 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGACGCACCTTGGCTGATTACAA 76 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||||| |||| || ||| Sbjct 75 CATCCAGAAGGAATCCACCCTCCAT 51 >seq111813 Length=4153 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||| | || || | || || || |||||||| | || || || | | Sbjct 1328 AATGCAGATTTTCATCAAGACTTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGCTC 1269 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | || | || |||| ||||| || ||||| || ||||||| Sbjct 1268 CGACACAATTGACAATGTGAAAGCCAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCA 1209 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||||| || ||||| || || | | || || ||||||||| Sbjct 1208 GCAGCGGCTGATATTTGCGGGTAAGCAGCTCGAAGATGGCTGGACGCTAGCCGACTACAA 1149 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||||||| | || || ||||| ||| |||| ||||| || || Sbjct 1148 CATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGTTTGAGAGGAGG 1101 >seq95628 Length=1400 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || || || || || ||||||||| | || || ||| | | Sbjct 7 ATGCAAATCTTCGTCAAGACACTGACCGGGAAGACCATCACCTTGGAGGTTGAAAGCTCT 66 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || |||| ||||| ||||| || ||| |||| ||| Sbjct 67 GACACGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGGATTCCCCCGGATCAG 126 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || || || ||||| || || | || || | ||| |||||| Sbjct 127 CAGAGGTTAATCTTTGCCGGGAAGCAGCTCGAGGATGGTCGTACGTTGGCCGATTACAAC 186 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| ||||| | ||| || | || || || ||| Sbjct 187 ATCCAGAAGGAGTCCACCCTGCACTTGGTGCTGAGGTTAAGAGGAGGC 234 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| | || || || | | Sbjct 235 ATGCAGATTTTTGTCAAGACACTGACAGGGAAGACCATCACCTTGGAGGTGGAGAGCTCG 294 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || |||| ||||| ||||| ||||| |||||||| Sbjct 295 GATACCATTGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGTATCCCACCGGACCAG 354 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || || || ||| |||| || | | ||||| ||||||||| Sbjct 355 CAGAGGTTGATCTTTGCTGGGAAGCAGTTGGAGGATGGAAGGACCCTTGCTGACTACAAC 414 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||| ||| |||| || || || || Sbjct 415 ATCCAGAAAGAGTCCACCCTCCACCTTGT 443 >seq70367 Length=2979 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || |||||||||||| | || || ||| | || Sbjct 286 ATGCAGATTTTTGTGAAGACCCTTACCGGGAAAACCATCACCCTAGAGGTTGAAAGCTCC 345 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || |||| ||||| ||||| ||||| |||| ||| Sbjct 346 GACACAATTGACAATGTAAAGGCCAAGATTCAGGACAAGGAGGGTATCCCACCGGATCAG 405 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || || || |||||||| || | || ||| | || |||||| Sbjct 406 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGTACCTTGGCTGATTACAAC 465 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 466 ATCCAGAAGGAGTCCACCCTTCACCTTGT 494 Score = 82.4 bits (90), Expect = 8e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| | || ||||| | || Sbjct 58 ATGCAGATCTTTGTCAAGACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGAGCTCC 117 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || || | ||||| || ||||| || |||| || Sbjct 118 GACACTATTGACAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCGGATCA 176 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || |||| || || || ||||| || || | |||||| | |||||||| Sbjct 177 GCAGAGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGCACCTTGGCGGACTACAA 236 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||| ||| | || |||| Sbjct 237 CATTCAGAAAGAGTCGACCTTGCA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514433535801680