Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq55416 105 1e-17 seq69221 104 4e-17 seq82767 98.7 1e-15 seq99159 95.1 2e-14 seq9178 89.7 8e-13 seq111813 86.0 9e-12 >seq55416 Length=9261 Score = 105 bits (116), Expect = 1e-17 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || |||||||| ||||| |||||||| || ||||| || ||||| || |||||||| Sbjct 4046 CAGGACAAAGAAGGCATACCTCCTGATCAGCAGAGGCTAATATTTGCCGGTAAACAATTG 3987 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| || |||| || | |||||| ||||| || ||||||||||| | || | ||| Sbjct 3986 GAAGATGGTAGAACCTTGGCAGATTACAATATCCAGAAAGAATCAACACTTCACCTTGTT 3927 Query 124749 TTA 124751 ||| Sbjct 3926 TTA 3924 >seq69221 Length=10640 Score = 104 bits (114), Expect = 4e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || |||||||||||||| || ||||| || || |||||||| ||||| || |||||| | Sbjct 5875 CAGGATAAAGAAGGTATCCCCCCTGACCAGCAGAGGCTTATATTTGCTGGTAAACAACTG 5934 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAAC 124735 || ||| || |||| || | ||| ||||| || |||||||||||||| Sbjct 5935 GAAGATGGTAGAACTTTGGCAGACTATAACATCCAAAAAGAATCAAC 5981 >seq82767 Length=6942 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 124629 CAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || || |||||||| ||||| ||||| || || ||||| || ||||| || ||||| || Sbjct 3985 CAGGACAAAGAAGGCATACCTCCTGACCAGCAGAGGCTAATATTTGCTGGTAAACAGTTG 3926 Query 124689 GAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTT 124748 || ||| || |||| || | |||||| ||||| || ||||||||||| | || | ||| Sbjct 3925 GAAGATGGTAGAACCTTGGCAGATTACAATATCCAGAAAGAATCAACACTTCACCTTGTT 3866 Query 124749 TTACGTTTACGAGGTGGTATTA 124770 ||| | | |||| |||| || Sbjct 3865 TTAAGACTTAGAGGAGGTACTA 3844 >seq99159 Length=5808 Score = 95.1 bits (104), Expect = 2e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTG-AAGCAAA 124597 ||||| || || | || || ||||||||||| || || || | ||| | | |||| | Sbjct 2717 ATGCAGATCTTCGTGAAAACCCTAACAGGCAAGACAATCACCCTCGAGGTGGAAAGCTCA 2658 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| |||| ||||| || || || ||||| || || || || || Sbjct 2657 -GACACAATCGATAACGTAAAGGCTAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCA 2599 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| || |||||| | || ||| |||| || | | ||| || || Sbjct 2598 GCAAAGGTTGATCTTTGCGGGCAAACAACTCGAAGATGGTCGCACCCTTGCAGACTACAA 2539 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || || || | |||||||| | ||| | |||||||||| Sbjct 2538 CATACAGAAGGAGTCTACCCTCCATTTGGTCCTTCGTCTCAGAGGTGGTAT 2488 >seq9178 Length=1540 Score = 89.7 bits (98), Expect = 8e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 || ||||||||||| ||||| || || ||||| || || ||| | || ||||| || || Sbjct 40 AAGATTCAAGATAAGGAAGGCATTCCGCCTGACCAGCAGAGGTTGATCTTTGCTGGTAAG 99 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || | || ||| | || ||| | | |||||||| || || || || |||||||||||| Sbjct 100 CAGCTGGAAGATGGGCGTACACTTGCTGATTATAACATCCAGAAGGAGTCAACTTTGCAT 159 Query 124743 TTGGTTTTACGTTTACGAGGTGGT 124766 | || | ||| | || |||||| Sbjct 160 CTCGTCCTTCGTCTTCGTGGTGGT 183 >seq111813 Length=4153 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||| ||| | |||||||| || || || || || || | ||| |||| ||| Sbjct 1990 ATGCAAATCTTTGTTAAGACACTTACTGGAAAGACAATCACCCTCGAGGTTGAGAGCTCC 1931 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || || |||||||| || ||||| || || ||||| || Sbjct 1930 -GACACCATTGACAACGTCAAGGCTAAGATTCAAGACAAGGAAGGAATTCCTCCTGACCA 1872 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||| | || || || ||||| || | || ||| | |||| | | ||||| || Sbjct 1871 GCAGAGGTTGATCTTCGCTGGAAAGCAGCTCGATGATGGCAGAACCCTTGCGGATTACAA 1812 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| ||||||||||| ||| | ||| | || | || | || ||||| || Sbjct 1811 TATCCAAAAAGAATCCACTCTCCATCTTGTCCTCTGTCTTCGCGGTGGAAT 1761 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 124622 GAAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAA 124681 ||| ||||||||||| ||||| |||||||| ||||| || |||| || ||||| || || Sbjct 1043 GAAGATTCAAGATAAGGAAGGGATACCACCGGATCAGCAGCGGCTCATCTTTGCCGGGAA 984 Query 124682 ACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCA 124741 || | |||||| | || || | | ||||||||| || || || || | ||| |||| Sbjct 983 GCAGCTGGAGGATGGGCGCACCCTGGCAGATTATAACATACAGAAGGAGTACACTCTGCA 924 Query 124742 TTTGGT 124747 |||| Sbjct 923 CCTGGT 918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754303995702400