Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq99159 122 1e-22 seq117762 104 3e-17 seq111813 102 9e-17 seq109031 102 9e-17 seq95628 100 3e-16 seq94329 82.4 9e-11 >seq99159 Length=5808 Score = 122 bits (134), Expect = 1e-22 Identities = 147/196 (75%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || ||||| ||||||||||| ||||| || | || || |||||||| ||||| || Sbjct 2070 CTCTTTCTGAATGTTGTAATCAGCAAGAGTGCGGCCATCTTCGAGCTGCTTTCCAGCAAA 2129 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | || ||||||||| | || | || |||||||||| ||| | || | | | | | Sbjct 2130 GATCAATCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCC-TGAATCTTGGCCTTAACAT 2188 Query 43112 CG-CCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| ||| ||||| |||| |||||| || |||||||||| |||| Sbjct 2189 TGTCGATGGTGTCGGAACTC---TCCACTTCGAGCGTGATTGTCTTGCCCGTTAAGGTCT 2245 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||||||||| Sbjct 2246 TAACAAAGATTTGCAT 2261 Score = 105 bits (116), Expect = 8e-18 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| || |||||||||| ||| | || |||||| ||||||||||| || || Sbjct 1579 CCTCCTCGCAACCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCCGCT 1638 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| ||||| || || | | ||||||||| | || Sbjct 1639 AGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGT 1698 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCG---CTCGATTC 43132 | | |||||||| ||| | || | ||| | | | | ||||| ||| || Sbjct 1699 ATCCCTTCCTTGTCT-TGAATCTTAGCTTTCACATTATCAATTGTGTCCGAACTC---TC 1754 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || || | || |||||||||||||| || ||||| |||||||| |||||| Sbjct 1755 AACCTCCAGGGTTATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATT 1806 >seq117762 Length=309 Score = 104 bits (114), Expect = 3e-17 Identities = 153/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||| | ||| ||||| || || ||||||||||||| || || | || || Sbjct 46 ACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAAGGTGCGTCCATCCTCG 105 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||| || || || || | | ||||||||| | || | || |||||||||| | Sbjct 106 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 165 Query 43095 ATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 || || |||| ||| | | | |||||| |||| || || || | |||||||| Sbjct 166 ATCTTGGCCTTGA-CGTTGTCAATCGTGTCCGAGCTC---TCGACTTCAAGAGTGATGGT 221 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || || ||||| || ||||||||||| Sbjct 222 CTTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 254 >seq111813 Length=4153 Score = 102 bits (112), Expect = 9e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 |||||||| ||||||| ||||| ||| | || |||||| || || ||||| || || Sbjct 1101 CCTCCTCTCAAACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCT 1160 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || |||| | || || ||||||||||| || ||||| || ||||||||||| | || Sbjct 1161 AGCGTCCAGCCATCTTCGAGCTGCTTACCCGCAAATATCAGCCGCTGCTGGTCCGGAGGA 1220 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTC 43132 | || ||||||||| ||| | || | ||| | | | | ||||| |||| || Sbjct 1221 ATGCCTTCCTTGTCC-TGAATCTTGGCTTTCACATTGTCAATTGTGTCGGAGCTC---TC 1276 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 ||| || | |||||||| || || || | ||||| | || || |||||| Sbjct 1277 CACCTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGATGAAAATCTGCATT 1328 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/196 (72%), Gaps = 10/196 (5%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || ||||| ||||||||||| || || || | | ||||| |||||||| |||||||| Sbjct 1800 TCTTTTTGGATATTGTAATCCGCAAGGGTTCTGCCATCATCGAGCTGCTTTCCAGCGAAG 1859 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | | ||||||||| | || | | ||||||| | ||| | || | |||| ||| Sbjct 1860 ATCAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTGT-CTTGAATCTTAGCCTTGA-CGT 1917 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || |||| ||||| || || || || || |||| Sbjct 1918 TGTCAATGGTGTCGGAGCTC---TCAACCTCGAGGGTGATTGTCTTTCCAGTAAGTGTCT 1974 Query 43168 TTACAAAGATTTGCAT 43183 | |||||||||||||| Sbjct 1975 TAACAAAGATTTGCAT 1990 >seq109031 Length=8095 Score = 102 bits (112), Expect = 9e-17 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| |||||| || |||||||||||| ||||| || |||| ||||| | || || Sbjct 286 CACCAGATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGCCAAAGTCCTACCATCTTC 227 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||| || || || || || || | ||||||||| | || | | |||||||||| Sbjct 226 TAGCTGTTTGCCGGCAAAAATCAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTG 167 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 43150 || || || | | | | |||||| |||| ||||| || | |||||| || Sbjct 166 TATCTTAGCCTTCACATTATCGATCGTGTCCGAGCTC---TCCACTTCCAGCGTGATCGT 110 Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| || | ||||| |||||||| ||||| Sbjct 109 CTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 77 >seq95628 Length=1400 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||||||| | || |||||| |||| ||| |||||| || || |||||||| ||| Sbjct 233 CCTCCTCTTAACCTCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 174 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || | || || |||||||| || || || || | | |||||| || | || Sbjct 173 AACGTACGACCATCCTCGAGCTGCTTCCCGGCAAAGATTAACCTCTGCTGATCCGGGGGA 114 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTC 43132 | | |||||||||| ||| | || | || | | | | |||||| ||| ||| Sbjct 113 ATCCCCTCCTTGTCC-TGAATCTTCGCCTTCACATTGTCGATCGTGTCAGAGCT---TTC 58 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || | |||||||| || || || || ||||| || ||||||||||| Sbjct 57 AACCTCCAAGGTGATGGTCTTCCCGGTCAGTGTCTTGACGAAGATTTGCAT 7 >seq94329 Length=7954 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 ||||| || || || ||| ||||||||| |||| |||||||||||||||| |||||| Sbjct 5059 AAATTATCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTC 5118 Query 60119 ACCACTATACTAC 60131 ||||||||||||| Sbjct 5119 ACCACTATACTAC 5131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570945628194040