Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq111813 102 1e-16 seq82767 91.5 2e-13 seq55416 91.5 2e-13 >seq111813 Length=4153 Score = 102 bits (112), Expect = 1e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | ||| | | || | ||| | ||| |||||||| ||||| ||||| | Sbjct 1762 TTCCACCGCGAAGACAGAGGACAAGATGGAGAGTGGATTCTTTTTGGATATTGTAATCCG 1821 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| ||||||| |||||| | || |||||||| || ||||| || ||||| || |||| Sbjct 1822 CAAGGGTTCTGCCATCATCGAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCAGGAG 1881 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| || ||||| Sbjct 1882 GAATTCCTTCCTTGTCTTG 1900 >seq82767 Length=6942 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || || |||||||||||||| || | || | || |||||||| ||||| |||||| Sbjct 3846 GTACCTCCTCTAAGTCTTAAAACAAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCT 3905 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | ||||| | ||| || || ||||| |||||||| || | || ||||| || ||| Sbjct 3906 GCCAAGGTTCTACCATCTTCCAACTGTTTACCAGCAAATATTAGCCTCTGCTGGTCAGGA 3965 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || |||||||| || || Sbjct 3966 GGTATGCCTTCTTTGTCCTG 3985 >seq55416 Length=9261 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || || || ||||||||||| || | || | || |||||||| ||||| |||||| Sbjct 3907 GTACCTCCCCTAAGTCTTAAAACAAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCT 3966 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | ||||| | ||| || |||||||| || ||||| || | || |||||||| ||| Sbjct 3967 GCCAAGGTTCTACCATCTTCCAATTGTTTACCGGCAAATATTAGCCTCTGCTGATCAGGA 4026 Query 146168 GGAATTCCTTCTTTATCTTG 146187 || || |||||||| || || Sbjct 4027 GGTATGCCTTCTTTGTCCTG 4046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742392587298560