Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq109031 107 1e-18 seq99159 100 2e-16 seq70367 93.3 3e-14 seq95628 87.8 1e-12 seq4809 87.8 1e-12 seq109834 82.4 5e-11 >seq109031 Length=8095 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || |||||||| |||||||| || ||||| || || || ||||||||||| | Sbjct 304 TCCACCACGCAGCCTAAGCACCAGATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGC 245 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | | || || | ||| ||||| || ||||| |||| ||||||||| || Sbjct 244 CAAAGTCCTACCATCTTCTAGCTGTTTGCCGGCAAAAATCAGCCTCTGCTGGTCCGGTGG 185 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| |||||| ||| | || | |||| || | || || Sbjct 184 GATTCCCTCCTTGTCCTGTATCTTAGCCTTCACATTATCGATCGTGTCCGAGCTCTCCAC 125 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| |||||| || |||||||| | ||| || ||||||||||||||| Sbjct 124 TTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCATC 76 >seq99159 Length=5808 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 34172 AGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGG 34231 ||||| ||||||| ||| | ||| ||||| || || ||||||||||||| || || Sbjct 1816 AGCCTGAGCACCAAGTGGAGAGTGCTTTCCTTTTGGATGTTGTAGTCGGCAAGTGTTCGT 1875 Query 34232 TCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCC 34291 | || || | ||||||||| |||||||| | || |||||| || || | || |||| Sbjct 1876 CCATCATCGAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGAGGAATGCCCTCC 1935 Query 34292 TTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTG 34351 || || ||||| ||| | || | |||| | ||||| || || || | || Sbjct 1936 TTATCTTGGATCTTGGCCTTGACATTGTCTATGGTATCGGAGCTCTCAACCTCAAGAGTA 1995 Query 34352 ATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || | ||||| |||||||| ||||| Sbjct 1996 ATGGTCTTTCCAGTTAAGGTTTTAACAAAGATTTGCAT 2033 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || |||| || || |||||| || | ||| || ||||| || |||||||| | Sbjct 1579 CCTCCTCGCAACCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCCGCT 1638 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || || | ||||||||| || ||||| | || ||||||||| ||| Sbjct 1639 AGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGT 1698 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTC-GAT---T 34337 | | |||||||| ||||| ||||| | || |||| | | ||| || | Sbjct 1699 ATCCCTTCCTTGTCTTGAATCTTA-GCTTTCACAT----TATCAATTGTGTCCGAACTCT 1753 Query 34338 CGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || |||| || ||||||||||| ||||| || || |||||||||||||| Sbjct 1754 CAACCTCCAGGGTTATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1805 >seq70367 Length=2979 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || |||||||| |||| ||| || || |||||||| ||||||||||| | | Sbjct 284 CCACCACGGAGCCTCAGGACCAAGTGCAAGGTCGACTCTTTCTGAATGTTGTAGTCCGCC 225 Query 34223 -AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || ||| | || || | |||||| || || || || |||| |||||| || || Sbjct 224 AAGGTG-CGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGATCCGGTGG 166 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||||| ||| | | | | || | |||| ||||| Sbjct 165 AATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCGAC 106 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| || || || || || || |||||||||||||| Sbjct 105 CTCAAGGGTGATGGTCTTCCCTGTAAGGGTCTTGACAAAGATCTGCAT 58 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| |||||||| || | || |||| | || |||| |||||| || || || Sbjct 476 TCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCATCTTCCAGCTGCTTCCCAGCAAAG 417 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | || |||||| || || | | ||||||||| ||||| ||||| || | Sbjct 416 ATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGAATCTTGGCCTTTACATTG 357 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| ||| || || | ||||||||||| ||||| || || |||||| Sbjct 356 TCAATTGTGTCGGAGCTTTCAACCTCTAGGGTGATGGTTTTCCCGGTAAGGGTCTTCACA 297 Query 34379 AAGATCTGCAT 34389 || |||||||| Sbjct 296 AAAATCTGCAT 286 >seq95628 Length=1400 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34174 CCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTC 34233 ||||||||||| ||| | || || ||||| |||||||| |||| || | ||| | Sbjct 222 CCTCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAACGTACGACC 163 Query 34234 GTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTT 34293 || || | |||||| || || || || | || |||||| || ||| | | |||||| Sbjct 162 ATCCTCGAGCTGCTTCCCGGCAAAGATTAACCTCTGCTGATCCGGGGGAATCCCCTCCTT 103 Query 34294 GTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGAT 34353 ||| ||||| ||| | || | | |||| || | ||| || |||| ||||| Sbjct 102 GTCCTGAATCTTCGCCTTCACATTGTCGATCGTGTCAGAGCTTTCAACCTCCAAGGTGAT 43 Query 34354 GGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || ||||| || || || || ||||| ||||| Sbjct 42 GGTCTTCCCGGTCAGTGTCTTGACGAAGATTTGCAT 7 >seq4809 Length=1103 Score = 87.8 bits (96), Expect = 1e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 34228 ACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCT 34287 |||| |||| || | |||||| || ||||| || | || ||||||||| ||| | | Sbjct 5 ACGGCCGTCCTCAAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGGTCTGGGGGAATTCC 64 Query 34288 CTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCAC 34347 |||||||| ||||| ||| | | | | || | |||| ||||| || | Sbjct 65 TTCCTTGTCTTGGATCTTAGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCAAG 124 Query 34348 CGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||||||| || |||||||| ||||||||||||||||||||| Sbjct 125 GGTGATGGTCTTACCGGTGAGGGTTTTCACAAAGATCTGCATC 167 >seq109834 Length=6695 Score = 82.4 bits (90), Expect = 5e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 34233 CGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCT 34292 |||| || | ||||||||| ||||| || |||| ||||||||| || | | ||||| Sbjct 3 CGTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGAATTCCCTCCT 62 Query 34293 TGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGA 34352 |||| ||||| ||| | | |||| | || | || || || | |||| Sbjct 63 TGTCCTGGATCTTAGCCTTGACGTTATCTATGGTGTCCGAGCTCTCCACCTCGAGGGTGA 122 Query 34353 TGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| ||||||||||| |||||||| |||||||||||| Sbjct 123 TGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCATC 160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322591659882080