Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq95628 109 4e-19 seq99159 104 2e-17 seq109031 98.7 8e-16 seq109834 89.7 4e-13 seq117762 87.8 1e-12 seq111813 82.4 6e-11 >seq95628 Length=1400 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 ||| ||||| || || | ||||||||||| ||| ||||||||| |||||||| ||| Sbjct 234 GCCTCCTCTTAACCTCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 175 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || ||| | || || || || || ||||| || || |||| ||| || || || || Sbjct 174 CAACGTACGACCATCCTCGAGCTGCTTCCCGGCAAAGATTAACCTCTGCTGATCCGGGGG 115 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | |||||||||||| ||| || ||| || | | |||| | || || Sbjct 114 AATCCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCGTGTCAGAGCTTTCAAC 55 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||| || ||||| || ||||| ||||| || ||||||||||| Sbjct 54 CTCCAAGGTGATGGTCTTCCCGGTCAGTGTCTTGACGAAGATTTGCAT 7 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||| ||||| ||||||||||| || | | || |||| || Sbjct 438 GTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAACTG 379 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || ||||||| ||| ||||| || || | ||||||||||||| ||| || Sbjct 378 CTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGAATCTT 319 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | ||| | ||||||||||| ||| || ||||| || || Sbjct 318 AGCCTTGACATTGTCAATGGTATCCGAGCTCTCCACCTCCAAGGTGATGGTCTTCCCTGT 259 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 ||| ||||| ||||| || |||||| Sbjct 258 CAGTGTCTTGACAAAAATCTGCATG 234 >seq99159 Length=5808 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||| |||||||||||||| || || ||| | || || Sbjct 2053 ACCAGGTGGAGAGTAGACTCTTTCTGAATGTTGTAATCAGCAAGAGTGCGGCCATCTTCG 2112 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| || || ||||| | ||| ||||| || || | |||||||||||| | Sbjct 2113 AGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 2172 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | | |||| || |||||| || | || || |||||| Sbjct 2173 ATCTTGGCCTTAACATTGTCGATGGTGTCGGAACTCTCCACTTCGAGCGTGATTGTCTTG 2232 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||||| | ||||| ||||||||||||||| Sbjct 2233 CCCGTTAAGGTCTTAACAAAGATTTGCATG 2262 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||| | | | ||||| || || || ||||||||| ||||||||||| Sbjct 2491 CCACCTCTGAGACGAAGGACCAAATGGAGGGTAGACTCCTTCTGTATGTTGTAGTCTGCA 2550 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || |||| | || || |||||||| || || || ||||||| || ||||| ||||| Sbjct 2551 AGGGTGCGACCATCTTCGAGTTGTTTGCCCGCAAAGATCAACCTTTGCTGGTCCGGAGGG 2610 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || ||||||||| ||||| ||| || | | |||| | |||||| Sbjct 2611 ATCCCTTCCTTGTCCTGGATTTTAGCCTTTACGTTATCGATTGTGTCTGAGCTTTCCACC 2670 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || |||||||| || || || ||||| ||||| ||||| Sbjct 2671 TCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 2717 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG-TCGTCCAGTT 45191 |||||| || ||| ||||| |||||||| || | || | | || || |||| | Sbjct 1374 GTGCAGGGTCGACTCTTTCTGGATGTTGTAATC-TGCAAGAGTCCTTCCATCTTCCAACT 1432 Query 45192 GTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTT 45251 | || || || ||||||| || ||||||||| || || | ||||||||| ||| || | Sbjct 1433 GCTTACCAGCAAATATCAGCCTCTGTTGGTCCGGTGGGATACCCTCCTTATCCTGTATCT 1492 Query 45252 TTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 | ||| || | | ||||| || ||||||||||| || |||||||| || | Sbjct 1493 TCGCCTTCACATTGTCGATTGTGTCCGAACTCTCCACCTCCAATGTGATCGTCTTCCCAG 1552 Query 45312 TCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||||||||||| || ||||| Sbjct 1553 TCAGCGTCTTCACAAATATCTGCAT 1577 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || |||| ||| | || |||| || || || |||||||||||| |||||||| Sbjct 1579 CCTCCTCGCAACCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCCGCT 1638 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || || || || || || || ||||||| ||| ||||| || || Sbjct 1639 AGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGT 1698 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | || |||||||| ||| || || || | | ||||| || ||| ||| Sbjct 1699 ATCCCTTCCTTGTCTTGAATCTTAGCTTTCACATTATCAATTGTGTCCGAACTCTCAACC 1758 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || || |||||||| || ||||| |||||||| ||||| Sbjct 1759 TCCAGGGTTATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1805 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || || ||||||||| ||||||||||| || ||| |||| || Sbjct 2281 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCAAGAGTGCGGCCGTCCTCA 2340 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| ||||||| || || || || || | ||||||||||| Sbjct 2341 AGCTGCTTTCCCGCGAAGATCAACCTTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGG 2400 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| || ||| || || | |||||| ||||| Sbjct 2401 ATCTTAGCCTTTACGTTGTCGATGGTGTCGGAACTCTCAACTTCAAGGGTAATTGTCTTC 2460 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || ||||| ||||| Sbjct 2461 CCAGTTAGGGTCTTAACGAAGATCTGCAT 2489 >seq109031 Length=8095 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| |||||||||||||| || | | | || || || ||||| ||||| || Sbjct 268 CTCCTTTTGAATGTTGTAGTCCGCCAAAGTCCTACCATCTTCTAGCTGTTTGCCGGCAAA 209 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 |||| || ||| ||||| || || | |||||||||||| || || ||| || Sbjct 208 AATCAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTGTATCTTAGCCTTCACATT 149 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | ||||| | |||||| |||| || ||||||||||| |||| |||||| || Sbjct 148 ATCGATCGTGTCCGAGCTCTCCACTTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTGAC 89 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 88 AAAGATCTGCAT 77 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || || || || || || || || |||| ||| ||||| || || | || |||||| Sbjct 459 TCCTCGAGCTGCTTCCCAGCAAAGATTAACCTCTGCTGGTCCGGCGGAATGCCTTCCTTG 400 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 || ||| ||| ||| || | | | ||||| | ||||||||||| || ||| Sbjct 399 TCTTGAATCTTTGCCTTCACATTATCAATGGTGTCCGAGCTCTCCACCTCCAAAGTGATC 340 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||||||||||||||||||||||| ||||| Sbjct 339 GTCTTCCCCGTCAGAGTCTTCACAAAGATCTGCAT 305 >seq109834 Length=6695 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 45180 CGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCT 45239 |||| || || || || |||||||| |||| || ||| ||||| ||||| | ||||||| Sbjct 3 CGTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGAATTCCCTCCT 62 Query 45240 TGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAA 45299 ||||| || || ||| || | | | ||||| | ||||||||| | ||| | Sbjct 63 TGTCCTGGATCTTAGCCTTGACGTTATCTATGGTGTCCGAGCTCTCCACCTCGAGGGTGA 122 Query 45300 TCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 | |||||||| || || || ||||| ||||| ||||| Sbjct 123 TGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 159 >seq117762 Length=309 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || ||| |||||||| |||||||| || || ||| | || || Sbjct 46 ACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCCAAGGTGCGTCCATCCTCG 105 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || ||||| || ||||||| ||| ||||| || || | |||||||||||| Sbjct 106 AGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 165 Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || ||| | || | || | ||||| | ||| || || | || || ||||| Sbjct 166 ATCTTGGCCTTGA-CGTTGTCAATCGTGTCCGAGCTCTCGACTTCAAGAGTGATGGTCTT 224 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| || || ||||| || ||||||||||| Sbjct 225 GCCGGTAAGGGTCTTGACGAAGATTTGCAT 254 >seq111813 Length=4153 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || || || || ||||| ||||| ||||||| ||| ||||| ||||| | || |||||| Sbjct 1836 TCATCGAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTG 1895 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 || ||| || ||| || | | | |||| | ||| ||||| | ||| || Sbjct 1896 TCTTGAATCTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACCTCGAGGGTGATT 1955 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || || || ||||| |||||||||||||| Sbjct 1956 GTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCAT 1990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394487806266853