Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq69221 104 2e-17 seq55416 98.7 8e-16 seq82767 84.2 2e-11 >seq69221 Length=10640 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 |||||||| || || | || | ||||||||||||||||||||| ||||| ||||| || Sbjct 6012 TCCTCCCCTAAGCCTCAAAACAAGGTGAAGTGTTGATTCTTTTTGGATGTTATAGTCTGC 5953 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 || ||| ||| |||||||| |||||| || ||| | ||||| || || || || ||| Sbjct 5952 CAAAGTTCTACCATCTTCCAGTTGTTTACCAGCAAATATAAGCCTCTGCTGGTCAGGGGG 5893 Query 18218 CACGCCTTCCTTATC 18232 | ||||| ||||| Sbjct 5892 GATACCTTCTTTATC 5878 >seq55416 Length=9261 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||||| ||||| | || | |||||||||||||||||| || || ||||| || ||| Sbjct 3910 CCTCCCCTAAGTCTTAAAACAAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCTGCC 3969 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| ||| ||||||||||||||| || ||| | || || || || ||||| || Sbjct 3970 AAGGTTCTACCATCTTCCAATTGTTTACCGGCAAATATTAGCCTCTGCTGATCAGGAGGT 4029 Query 18219 ACGCCTTCCTTATC 18232 | |||||| || || Sbjct 4030 ATGCCTTCTTTGTC 4043 >seq82767 Length=6942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| | ||||| | || | |||||||||||||||||| || || ||||| || ||| Sbjct 3849 CCTCCTCTAAGTCTTAAAACAAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCTGCC 3908 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| ||| ||||||||| ||||| || ||| | || || || || || || || Sbjct 3909 AAGGTTCTACCATCTTCCAACTGTTTACCAGCAAATATTAGCCTCTGCTGGTCAGGAGGT 3968 Query 18219 ACGCCTTCCTTATC 18232 | |||||| || || Sbjct 3969 ATGCCTTCTTTGTC 3982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378779995252785