Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq109031 116 3e-21 seq66988 102 7e-17 seq82767 98.7 9e-16 seq111813 95.1 1e-14 seq103400 91.5 1e-13 seq99159 91.5 1e-13 seq69221 86.0 6e-12 >seq109031 Length=8095 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||| |||| ||||| |||||||| | || || || || Sbjct 77 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACGATCACGCTGGAAGTGGAGAGCTCG 136 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || | ||| ||||||||| || | || || |||||| Sbjct 137 GACACGATCGATAATGTGAAGGCTAAGATACAGGACAAGGAGGGAATCCCACCGGACCAG 196 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || ||||||||| | ||||| || |||| || || || ||| Sbjct 197 CAGAGGCTGATTTTTGCCGGCAAACAGCTAGAAGATGGTAGGACTTTGGCGGACTACAAC 256 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| || |||||| | |||||||| ||||| ||| | || || Sbjct 257 ATTCAAAAGGAGTCGACTTTGCATCTGGTGCTTAGGCTGCGTGGTGG 303 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||||||||| || || |||||||| | || || || || Sbjct 305 ATGCAGATCTTTGTGAAGACTCTGACGGGGAAGACGATCACTTTGGAGGTGGAGAGCTCG 364 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || || ||| | | ||||||||||| | ||||| ||||| Sbjct 365 GACACCATTGATAATGTGAAGGCAAAGATTCAAG-ACAAGGAAGGCATTCCGCCGGACCA 423 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | |||| || ||||| || ||| | || || | ||| | |||||||| Sbjct 424 GCAGAGGTTAATCTTTGCTGGGAAGCAGCTCGAGGATGGAAGGACCCTTGCTGATTATAA 483 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || || |||||||| || || || ||| Sbjct 484 TATTCAGAAGGAGTCGACTCTCCACCTTGTTCTT 517 >seq66988 Length=1372 Score = 102 bits (112), Expect = 7e-17 Identities = 165/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || |||||||| |||| || || Sbjct 371 AAGATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACGATCACTCTCGAGGTCGAGAGT 312 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| | ||||| || || || |||||||| | |||||||| Sbjct 311 TCTGATACCATCGACAACGTCAAGGCGAAGATCCAAGATAAGGAAGGAATTCCGCCCGAT 252 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGA--CTATGAGCGATT 31367 |||||||| || || ||||| || || ||| | |||||| | || | || | |||| Sbjct 251 CAGCAGCGCCTGATCTTCGCCGGAAAGCAGCTCGAAGACGG-ACGAACCCTTGCG-GATT 194 Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 | || ||||| || ||||||||||||||||| || ||| | || | ||||||| Sbjct 193 ACAATATTCAGAAGGAATCGACTCTTCATCTCGTTCTTCGTCTCCGTGGCGGTA 140 >seq82767 Length=6942 Score = 98.7 bits (108), Expect = 9e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 |||||| |||||| | || || ||||||||| | |||||||| ||||| ||||||||||| Sbjct 3983 GGACAAAGAAGGCATACCTCCTGACCAGCAGAGGCTAATATTTGCTGGTAAACAGTTGGA 3924 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || ||||| || || || |||||||| || ||||| || || | Sbjct 3923 AGATGGTAGAACCTTGGCAGATTACAATATCCAGAAAGAATCAACACTTCACCTTGTTTT 3864 Query 31405 TAGACTGAGGGGCGGTA 31421 ||||| || || |||| Sbjct 3863 AAGACTTAGAGGAGGTA 3847 >seq111813 Length=4153 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||| | |||||| |||| || || || ||||| | || || || ||| Sbjct 1327 ATGCAGATTTTCATCAAGACTTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGCTCC 1268 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | || ||||||||||||| | || || |||||| Sbjct 1267 GACACAATTGACAATGTGAAAGCCAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCAG 1208 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || ||||| || || || ||| | ||||| ||| | ||| || ||| Sbjct 1207 CAGCGGCTGATATTTGCGGGTAAGCAGCTCGAAGATGGCTGGACGCTAGCCGACTACAAC 1148 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || ||||| ||||||||||| || Sbjct 1147 ATCCAGAAGGAGTCGACCCTTCATCTGGTGCT 1116 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || || || || |||||| |||| ||||| ||| Sbjct 1990 ATGCAAATCTTTGTTAAGACACTTACTGGAAAGACAATCACCCTCGAGGTTGAGAGCTCC 1931 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || ||||||||||| | || || |||||| Sbjct 1930 GACACCATTGACAACGTCAAGGCTAAGATTCAAGACAAGGAAGGAATTCCTCCTGACCAG 1871 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || |||||||| || ||| | || || | || | ||||| || Sbjct 1870 CAGAGGTTGATCTTCGCTGGAAAGCAGCTCGATGATGGCAGAACCCTTGCGGATTACAAT 1811 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||||||||| ||||| ||||| || || Sbjct 1810 ATCCAAAAAGAATCCACTCTCCATCTTGTCCT 1779 >seq103400 Length=1682 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || ||||||||||||||| |||| || || Sbjct 140 AAAATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACGATCACCCTCGAAGTCGAGAGT 81 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | || || || ||| |||||||||||| | ||||| ||| Sbjct 80 TCCGACACAATCGACATTGTGAAGGCGAAAATTCAGGACAAGGAAGGAATTCCGCCGGAC 21 Query 31310 CAGCAGCGTCTAATATTCGC 31329 |||||||| || || ||||| Sbjct 20 CAGCAGCGGCTGATCTTCGC 1 >seq99159 Length=5808 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| || || |||||||| | || || || || Sbjct 1577 ATGCAGATATTTGTGAAGACGCTGACTGGGAAGACGATCACATTGGAGGTGGAGAGTTCG 1518 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || ||| ||| ||||| || | || || ||||| Sbjct 1517 GACACAATCGACAATGTGAAGGCGAAGATACAGGATAAGGAGGGTATCCCACCGGACCAA 1458 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || ||||| ||||| || ||||||||||| | |||| | ||||| ||| Sbjct 1457 CAGAGGCTGATATTTGCTGGTAAGCAGTTGGAAGATGGAAGGACTCTTGCAGATTACAAC 1398 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || ||||| ||||| || || || || || | ||| | || ||| Sbjct 1397 ATCCAGAAAGAGTCGACCCTGCACCTTGTCCTCCGCCTGCGTGGTGGT 1350 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || |||||||| || ||| | || ||||| || Sbjct 1805 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATAACCCTGGAGGTTGAGAGTTCG 1746 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | || ||||||||||| | || || |||||| Sbjct 1745 GACACAATTGATAATGTGAAAGCTAAGATTCAAGACAAGGAAGGGATACCCCCGGACCAG 1686 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGC-GATTATA 31370 ||| | | || || |||||||| ||| | || || | | | ||| | ||| || || | Sbjct 1685 CAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGA-TGGACGCACTCT-AGCGGACTACA 1628 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 | ||||| || || ||||||||||||||||| Sbjct 1627 ATATTCAGAAGGAGTCGACTCTTCATCTGGT 1597 >seq69221 Length=10640 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||| || ||||| | || || ||||||||| | || ||||| ||||| ||||| |||| Sbjct 5877 GGATAAAGAAGGTATCCCCCCTGACCAGCAGAGGCTTATATTTGCTGGTAAACAACTGGA 5936 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||| || || |||||||| ||||||||||| || ||||| || || | Sbjct 5937 AGATGGTAGAACTTTGGCAGACTATAACATCCAAAAAGAATCAACACTTCACCTTGTTTT 5996 Query 31405 TAGACTGAGGGGCGG 31419 || || ||||| || Sbjct 5997 GAGGCTTAGGGGAGG 6011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445086645244560