Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq21024 125 9e-24 seq103549 104 3e-17 >seq21024 Length=7623 Score = 125 bits (138), Expect = 9e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| |||||||| | ||||||||||| || || |||||| | || | |||| Sbjct 2794 GTTCCAGCATTAAAAAGAGTAGGAGAAGCATGTGTGAACCATCGCTGTGACAAAAGATGA 2735 Query 63723 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | || || || || ||||| | ||| || ||||| || || |||||||| || Sbjct 2734 TATGTTTGTATCGCAGAATCAATATCATCCTTG-TGGATTCCAACAGCAACACGCATCAA 2676 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 ||||||||| |||||||| |||| ||| || || || |||| ||||| |||| | Sbjct 2675 CATGTGCTGTGGTCTTTCTACAACCTTGCCTTTGATCTTTAACAGATAGGACCTTTCAAG 2616 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 |||||||||||||||| | | || |||||||| || || || || Sbjct 2615 AGTTTTAAAACCAAAAAAATCATAGTCAAAGTCTCTGTCATATATGAT 2568 >seq103549 Length=14649 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 || || |||||||| | |||||||||||| || || |||||| || || || |||| Sbjct 7486 GTCCCAGCATTAAAAAGGGTAGGAGAAGCATGAGTGAACCATCGTTGCGACAGAAGATGA 7427 Query 63723 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63782 || || | || | || || ||||| | ||| ||||| || | || ||||||||| Sbjct 7426 TATGTTTTTATCACAGAATCAATATCATCCTTATGGATTCCAACAGAAACTCGCATTAAC 7367 Query 63783 ATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63842 ||||| || || |||||||||| ||| | | || |||| || || |||| | Sbjct 7366 ATGTGTTGTGGCCTTTCAACAACCTTGCCTTGAACCTTTAACAGATAAGACCTTTCAAGC 7307 Query 63843 GTTTTAAAACCAAAATA 63859 ||||||||||||||||| Sbjct 7306 GTTTTAAAACCAAAATA 7290 Score = 86.0 bits (94), Expect = 8e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 63162 TCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTA 63221 ||||| ||||| ||||||||| ||| || || || |||||| || |||||| | Sbjct 8399 TCTCTCTCGTACTTAGTATACAAAGCTTCAAATTCTTCACCCCAACAATCAGCCAATCCA 8340 Query 63222 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 63281 || |||| ||||| | || ||||| | ||| | | || |||| || ||||||| Sbjct 8339 GGGGCCTCATTTGGACAGAACAGTGACCATTGTCCATTAGACTGAACTCTTTGCATAAAG 8280 Query 63282 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTC 63331 |||||||| ||||||||||| ||| | ||||||| | || ||||| Sbjct 8279 AGATCAGGTATCCAAAGAGCATAAAACAAGTCTCTTGCACGGTGCTCCTC 8230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628857183269040