Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq111813 102 8e-17 seq99159 89.7 5e-13 seq103549 84.2 2e-11 >seq111813 Length=4153 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||||| || | |||| || ||||| || || ||||| || ||| Sbjct 1101 CCTCCTCTCAAACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCT 1160 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||||||||| ||||| ||| | ||||| || ||||| || ||||| Sbjct 1161 AGCGTCCAGCCATCTTCGAGCTGCTTACCCGCAAATATCAGCCGCTGCTGGTCCGGAGGA 1220 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| | || | ||| | | || | |||||||| | |||||| Sbjct 1221 ATGCCTTCCTTGTC-CTGAATCTTGGCTTTCACATTGTCAATTGTGTCGGAGCTCTCCAC 1279 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | ||||| || ||||| || || | ||| || ||||| Sbjct 1280 CTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGATGAAAATCTGCAT 1327 >seq99159 Length=5808 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| |||||||| ||||| | |||| ||||||||||| || ||| Sbjct 2065 GTAGACTCTTTCTGAATGTTGTAATCAGCAAGAGTGCGGCCATCTTCGAGCTGCTTTCCA 2124 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||||| | ||||| || || || ||||| || ||||| ||| | || | || Sbjct 2125 GCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTC-CTGAATCTTGGCCTT 2183 Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | | || | ||||||| |||||| || | || | |||||||| || || || Sbjct 2184 AACATTGTCGATGGTGTCGGAACTCTCCACTTCGAGCGTGATTGTCTTGCCCGTTAAGGT 2243 Query 139747 TTTTACGAATATTTGCAT 139764 || || || |||||||| Sbjct 2244 CTTAACAAAGATTTGCAT 2261 >seq103549 Length=14649 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 153435 ATGCGCAACATGACAAATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATGG 153494 |||| | || || ||| | || || | |||||| | ||||| ||||| || | ||| Sbjct 9231 ATGCCTAGCAAGATAAAGGTGTCAGCGAGACCTTGTACACCAATTCCTATTGGTCTATGA 9172 Query 153495 CGCATATTAGAtttttttGCAGCTTCAACAGGATAGAAATTGCGGTCGATAATTTTATT 153553 ||||||||||| ||||||||| |||||||||||| |||||| || || ||||| || Sbjct 9171 CGCATATTAGACCTTTTTGCAGTTTCAACAGGATAAAAATTGACATCAATTATTTTGTT 9113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495307545805600