Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq66988 91.5 1e-13 seq70367 87.8 1e-12 seq117762 84.2 2e-11 >seq66988 Length=1372 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 ||||| || | ||||||||| | | || ||| |||| || | || || ||||| || Sbjct 178 TCCTTCTGAATATTGTAATCCGCAAGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAG 237 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 |||| ||||| ||||||| ||| | ||||| || || |||| | | ||||| || Sbjct 238 ATCAGGCGCTGCTGATCGGGCGGAATTCCTTCCTTATCTTGGATCTTCGCCTTGACGTTG 297 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | || || | |||||| || | || || || ||||||||||| |||||||| Sbjct 298 TCGATGGTATCAGAACTCTCGACCTCGAGAGTGATCGTCTTTCCGGTTAGGGTTTTCACG 357 Query 43099 AAAATTTGCATTTTC 43113 || || ||||| ||| Sbjct 358 AAGATCTGCATCTTC 372 >seq70367 Length=2979 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | |||||||| | ||| ||||| | || |||| || || || ||||| Sbjct 477 CTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCATCTTCCAGCTGCTTCCCAGCAAA 418 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTC 43036 ||||| | ||| ||||| | || | ||| || || || |||| || | || || Sbjct 417 GATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTGTC-CTGAATCTTGGCCTTTACAT 359 Query 43037 TGCCAACTGTGTCGCCAGCCT-CGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTC 43095 || ||| ||||||| ||| | | || |||| || || ||||| ||||| || || ||| Sbjct 358 TGTCAATTGTGTCGG-AGCTTTCAACCTCTAGGGTGATGGTTTTCCCGGTAAGGGTCTTC 300 Query 43096 ACAAAAATTTGCAT 43109 |||||||| ||||| Sbjct 299 ACAAAAATCTGCAT 286 >seq117762 Length=309 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||||| ||| ||||| || | |||||||| | | Sbjct 28 CCACCACGGAGACGGAGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 87 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| | || || | || ||||||||||| ||||| | ||| || || | || Sbjct 88 AAGGTGCGTCCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGA 147 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | || || || || |||| | ||||| || ||| ||||| | ||| |||||| Sbjct 148 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTC-CGAGCTCTCGAC 206 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || ||||| || || || || || |||||||| Sbjct 207 TTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380802583611594