Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq21024 125 1e-23 seq103549 104 3e-17 >seq21024 Length=7623 Score = 125 bits (138), Expect = 1e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| |||||||| | ||||||||||| || || |||||| | |||| |||| Sbjct 2794 GTTCCAGCATTAAAAAGAGTAGGAGAAGCATGTGTGAACCATCGCTGTGACAAAAGATGA 2735 Query 72478 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAA 72536 || || | || || || || ||||| | ||| || ||||| || || |||||||| || Sbjct 2734 TATGTTTGTATCGCAGAATCAATATCATCCTTG-TGGATTCCAACAGCAACACGCATCAA 2676 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| ||||| |||||||| || | |||| || || || |||| ||||| |||| | Sbjct 2675 CATGTGCTGTGGTCTTTCTACAACCTTGCCTTTGATCTTTAACAGATAGGACCTTTCAAG 2616 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 |||||||||||||||| | | || |||||||| || || || || Sbjct 2615 AGTTTTAAAACCAAAAAAATCATAGTCAAAGTCTCTGTCATATATGAT 2568 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || ||||| || | |||| ||| |||| ||| |||||| | |||||||| ||| ||| Sbjct 3167 CCGCCCTGGTCCACATATCGAGCAGTGTCATTGAAAACTCGAAGCATTGGAACAATGCCA 3108 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || ||| ||||| || || ||||| ||||| ||||||| ||||| || || Sbjct 3107 TTTGATAATCCATTTGTTCCACGTATATAACTTCCTGTGGCACGGATATTATGAACAGAC 3048 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| || || || || ||| |||| || ||| || | ||||| || ||| Sbjct 3047 ACACCAATACCTCCAGCTGATTTGCTAATTACAGCACATTCCTTAAGTGTATCGTATATG 2988 Query 72358 CCCTCTATACTATCATCCATCATG 72381 ||||| |||||||||||| ||||| Sbjct 2987 CCCTCAATACTATCATCCTTCATG 2964 >seq103549 Length=14649 Score = 104 bits (114), Expect = 3e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || |||||||| | |||||||||||| || || |||||| || ||||| |||| Sbjct 7486 GTCCCAGCATTAAAAAGGGTAGGAGAAGCATGAGTGAACCATCGTTGCGACAGAAGATGA 7427 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || || | || | || || ||||| | ||| ||||| || | || ||||||||| Sbjct 7426 TATGTTTTTATCACAGAATCAATATCATCCTTATGGATTCCAACAGAAACTCGCATTAAC 7367 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAA 72597 || || || || |||||||| | |||| | | || |||| || || |||| | Sbjct 7366 ATGTGTTGTGGCCTTTCAACAACCTTGCCTTGAACCTTTAACAGATAAGACCTTTCAAGC 7307 Query 72598 GTTTTAAAACCAAAATA 72614 ||||||||||||||||| Sbjct 7306 GTTTTAAAACCAAAATA 7290 Score = 91.5 bits (100), Expect = 2e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 71917 TCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCA 71976 ||||| ||||| | ||||| || ||| || || || |||||| || | |||||| Sbjct 8399 TCTCTCTCGTACTTAGTATACAAAGCTTCAAATTCTTCACCCCAACAATCAGCCAATCCA 8340 Query 71977 GGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAG 72036 || ||||| ||||| | || |||||| | ||||| | | |||| || ||||||| Sbjct 8339 GGGGCCTCATTTGGACAGAACAGTGACCATTGTCCATTAGACTGAACTCTTTGCATAAAG 8280 Query 72037 AGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTC 72086 |||||||| ||||||||||| ||| | ||||| | | |||||||| Sbjct 8279 AGATCAGGTATCCAAAGAGCATAAAACAAGTCTCTTGCACGGTGCTCCTC 8230 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || ||||| || | |||| ||| |||| ||| |||||| | |||||||| || ||| Sbjct 7883 CCACCCTGGTCAACATATCGAGCAGTGTCATTGAAAACTCGAAGCATTGGAACAACGCCA 7824 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || || ||||| || || ||||| ||||| | ||||||||||| | || Sbjct 7823 TTTGACAATCCATTTGTTCCACGTATATAACTTCCTGTAGCACGAATATTATGGACGGAC 7764 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | ||| || || || || |||| || | || ||| || | |||||||| ||| Sbjct 7763 ACACCAATCCCTCCAGCTGATTTACTAATAACAGCACATTCCTTAAGTGTATCATATATG 7704 Query 72358 CCCTCTATACTATCATCCATCATG 72381 ||||| |||||||||||| ||||| Sbjct 7703 CCCTCAATACTATCATCCTTCATG 7680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670115771444680