Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq117762 91.5 1e-13 seq99159 89.7 5e-13 seq55416 89.7 5e-13 seq82767 84.2 2e-11 seq103549 82.4 8e-11 >seq117762 Length=309 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || ||||| | || ||||| || || ||||||||||| | Sbjct 28 CCACCACGGAGACGGAGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 87 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | |||| || | || ||||| || || || ||| |||||| | ||||| || || || Sbjct 88 AAGGTGCGTCCA-TCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGGGG 146 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| || ||||| || || || | | || | |||||||| | || || Sbjct 147 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGCTCTCGAC 206 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| ||| | ||||||||||| | || || ||||| ||||||||| Sbjct 207 TTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATTTGCATA 255 >seq99159 Length=5808 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| | ||| | || ||||| | ||||| || || ||||||||||| || Sbjct 2491 CCACCTCTGAGACGAAGGACCAAATGGAGGGTAGACTCCTTCTGTATGTTGTAGTCTGCA 2550 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||||||||||| || ||| |||||| | |||||| || ||||| Sbjct 2551 AGGGTGCGACCATCTTCGAGTTGTTTGCCCGCAAAGATCAACCTTTGCTGGTCCGGAGGG 2610 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||||| |||| | || | ||||| | | ||| || Sbjct 2611 ATCCCTTCCTTGTCCTGGATTTTAGCCTTTACGTTATCGATTGTGTCTGAGCTTTCCACC 2670 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| || | ||||| ||||| || ||||| Sbjct 2671 TCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 2717 >seq55416 Length=9261 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 143032 ||||| | |||| ||| |||||||| || || |||||||| || || || ||| Sbjct 3925 AAAACAAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCTGCCAAGGTTCTACCATCT 3984 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 || | ||||||||| ||| | || || | |||||||| |||||||||||||||||||| Sbjct 3985 TCCAATTGTTTACCGGCAAATATTAGCCTCTGCTGATCAGGAGGTATGCCTTCTTTGTC 4043 >seq82767 Length=6942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 142973 AAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCT 143032 ||||| | |||| ||| |||||||| || || |||||||| || || || ||| Sbjct 3864 AAAACAAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCTGCCAAGGTTCTACCATCT 3923 Query 143033 TCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 143091 || | |||||||||||| | || || | ||||| || |||||||||||||||||||| Sbjct 3924 TCCAACTGTTTACCAGCAAATATTAGCCTCTGCTGGTCAGGAGGTATGCCTTCTTTGTC 3982 >seq103549 Length=14649 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 156878 TCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttttttGCA 156937 || || | |||||| | ||||| || || || | ||| ||||||||||| |||||||| Sbjct 9210 TCAGCGAGACCTTGTACACCAATTCCTATTGGTCTATGACGCATATTAGACCTTTTTGCA 9151 Query 156938 GTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATT 156975 ||||||| ||| || |||||| |||||| ||||| || Sbjct 9150 GTTTCAACAGGATAAAAATTGACATCAATTATTTTGTT 9113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506241247403760