Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq111813 96.9 3e-15 seq70367 93.3 3e-14 >seq111813 Length=4153 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATT 15218 |||||||||||| || ||||| ||| ||||||| || ||| |||| | ||||| | || Sbjct 1352 ATGAAGGGTGGATTCCTTTTGAATGCTGTAATCTGCCTAGTGTTCTGCCATCTTCCAGTT 1411 Query 15219 GTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTT 15278 | || ||||| | | || ||||| || ||| || || |||||||| || | |||| Sbjct 1412 GCTTCCCAGCAAAGAAAAATCGTTGCTGCTCGGGGGGGATCCCTTCTTTATCTTAGATTT 1471 Query 15279 TGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 || ||| || | || || || || |||| || || | ||| || || || || | Sbjct 1472 TGGCCTTGACGTTGTCGATAGTGTCTGAGCTTTCAACTTCAAGGGTTATCGTCTTGCCAG 1531 Query 15339 TCAGAGTTTTTACAAAAATTTGCAT 15363 |||||||| || ||||| ||||| Sbjct 1532 CAAGAGTTTTCACGAAAATCTGCAT 1556 Score = 86.0 bits (94), Expect = 5e-12 Identities = 153/223 (69%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| || ||||| |||||||| || |||||||| || |||| | || || | || Sbjct 1787 ATGGAGAGTGGATTCTTTTTGGATATTGTAATCCGCAAGGGTTCTGCCATCATCGAGCTG 1846 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || |||||| | ||||| | || ||||| ||||||||||| ||||| ||| || Sbjct 1847 CTTTCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTGTCTTGAATCTT 1906 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || | || ||||| ||| | || || || | ||| || || || || || Sbjct 1907 AGCCTTGACGTTGTCAATGGTGTCGGAGCTCTCAACCTCGAGGGTGATTGTCTTTCCAGT 1966 Query 15340 CAGAGTTTTTACAAAAATTTGCAT----ATTTGAAAATAAAAT 15378 || || || ||||| |||||||| ||| |||||| ||| Sbjct 1967 AAGTGTCTTAACAAAGATTTGCATCTGCATTCAAAAATACAAT 2009 >seq70367 Length=2979 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||||||||||| || || || ||||||||||| || || | | | ||||| | || Sbjct 488 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAG-GTACGGCCATCTTCCAGCTG 430 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | ||||| | || || || ||| || || || ||||| ||| || Sbjct 429 CTTCCCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGAATCTT 370 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | ||||||| | || || || ||| |||| || |||| ||| |||||||| || || Sbjct 369 GGCCTTTACATTGTCAATTGTGTCGGAGCTTTCAACCTCTAGGGTGATGGTTTTCCCGGT 310 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || |||||||| |||||| Sbjct 309 AAGGGTCTTCACAAAAATCTGCATA 285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361640715700413