Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq109031 102 7e-17 seq99159 91.5 1e-13 seq70367 89.7 4e-13 seq95628 87.8 1e-12 >seq109031 Length=8095 Score = 102 bits (112), Expect = 7e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || |||| ||| | ||||| ||||| || |||||||||||||| ||||| |||| Sbjct 305 TTCCACCACGCAGCCTAAGCACCAGATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCG 246 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 ||| || | | || || |||||||| || ||| |||| || |||||||| ||| | Sbjct 245 CCAAAGTCCTACCATCTTCTAGCTGTTTGCCGGCAAAAATCAGCCTCTGCTGGTCCGGTG 186 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCC 18991 | | ||||| ||||| || || || || | ||| || || | || |||| Sbjct 185 GGATTCCCTCCTTGTCCTGTATCTTAGCCTTCACATTATCGATCGTGTC-CGAGCTCTCC 127 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | || || || || || || ||||| |||||||| || ||||| Sbjct 126 ACTTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 77 >seq99159 Length=5808 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||||||||| ||||||| || | || |||||||| ||||||||||| ||||| Sbjct 1579 CCTCCTCGCAACCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCCGCT 1638 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||| ||||| || || ||| |||| | |||||||| ||| ||| Sbjct 1639 AGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGT 1698 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || || ||||| ||| || ||| || | | | || || | ||| Sbjct 1699 ATCCCTTCCTTGTCTTGAATCTTAGCTTTCACATTATCAATTGTGTCCGAACTCTCAACC 1758 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||| |||||||| || || | || |||||||| || |||||| Sbjct 1759 TCCAGGGTTATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATT 1806 >seq70367 Length=2979 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| | |||| |||||| || ||||| || ||||| ||||| |||||| Sbjct 284 CCACCACGGAGCCTCAGGACCAAGTGCAAGGTCGACTCTTTCTGAATGTTGTAGTCCGCC 225 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | ||||| ||||| || || ||| | ||||| |||||||||||| || Sbjct 224 AAGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGATCCGGTGGA 165 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| || ||||| || || || || | | | | ||| ||| ||| Sbjct 164 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCGACC 105 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || ||||| | || |||||||| || ||||| Sbjct 104 TCAAGGGTGATGGTCTTCCCTGTAAGGGTCTTGACAAAGATCTGCAT 58 >seq95628 Length=1400 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||||| ||||| | ||||| ||||| || |||||||| || || |||||||| ||| Sbjct 233 CCTCCTCTTAACCTCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 174 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||| ||||| || || ||| | || | |||||||||||| ||| Sbjct 173 AACGTACGACCATCCTCGAGCTGCTTCCCGGCAAAGATTAACCTCTGCTGATCCGGGGGA 114 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCC 18991 | ||||| ||||| ||| ||| || || | | ||| || | ||| || || Sbjct 113 ATCCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCGT---GTCAGAGCTTTCA 57 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || | || ||||| || |||||||| Sbjct 56 ACCTCCAAGGTGATGGTCTTCCCGGTCAGTGTCTTGACGAAGATTTGCAT 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413956417436242