Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq69221 102 7e-17 seq55416 91.5 1e-13 seq82767 84.2 2e-11 >seq69221 Length=10640 Score = 102 bits (112), Expect = 7e-17 Identities = 111/146 (76%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || |||||| ||||||| | | |||||| || | || ||||| ||||||||||| ||| Sbjct 6023 TTGATCATTGTTCCTCCCCTAAGCCTCAAAACAAGGTGAAGTGTTGATTCTTTTTGGATG 5964 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 || || || ||| |||| || |||||||| |||||| || ||| | ||||||||||| Sbjct 5963 TTATAGTCTGCCAAAGTTCTACCATCTTCCAGTTGTTTACCAGCAAATATAAGCCTCTGC 5904 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 || || ||| | |||||||| || Sbjct 5903 TGGTCAGGGGGGATACCTTCTTTATC 5878 >seq55416 Length=9261 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 20006 TGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGT 20065 || ||||| |||||||| || || |||||||| ||| ||| || ||||||||||||| Sbjct 3934 TGAAGTGTTGATTCTTTCTGGATATTGTAATCTGCCAAGGTTCTACCATCTTCCAATTGT 3993 Query 20066 TTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 || || ||| | || |||||||| ||||| || | |||||||||||| Sbjct 3994 TTACCGGCAAATATTAGCCTCTGCTGATCAGGAGGTATGCCTTCTTTGTC 4043 >seq82767 Length=6942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||||| | || || || | || ||||| |||||||| || || |||||||| || Sbjct 3849 CCTCCTCTAAGTCTTAAAACAAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCTGCC 3908 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| || ||||||||| ||||| || ||| | || |||||||| || || || Sbjct 3909 AAGGTTCTACCATCTTCCAACTGTTTACCAGCAAATATTAGCCTCTGCTGGTCAGGAGGT 3968 Query 20102 ACGCCTTCTTTGTC 20115 | |||||||||||| Sbjct 3969 ATGCCTTCTTTGTC 3982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418963362078033