Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq70367 96.9 3e-15 seq99159 89.7 4e-13 seq66988 89.7 4e-13 >seq70367 Length=2979 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || ||||||||||||||||| || | || ||||||||| Sbjct 488 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCATCTTCCAGCTGC 429 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || || | |||||||||| || | || ||||||||| ||| || Sbjct 428 TTCCCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGAATCTTG 369 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | || || |||| || ||| | || |||||||| ||||| Sbjct 368 GCCTTTACATTGTCAATTGTGTCGGAGCTTTCAACCTCTAGGGTGATGGTTTTCCCGGTA 309 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 || || ||||||||||||||||| Sbjct 308 AGGGTCTTCACAAAAATCTGCAT 286 >seq99159 Length=5808 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| ||||||| ||||| | |||||| || |||||| ||||| ||||| || || Sbjct 1579 CCTCCTCGCAACCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCCGCT 1638 Query 48560 A-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | || || | ||||| |||||||| || | |||| || | |||||| ||| || Sbjct 1639 AGAGTG-CGTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGG 1697 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| ||| || || | | | || || || | | ||| Sbjct 1698 TATCCCTTCCTTGTCTTGAATCTTAGCTTTCACATTATCAATTGTGTCCGAACTCTCAAC 1757 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | ||||||||||| || ||||| || || ||||| |||||||| Sbjct 1758 CTCCAGGGTTATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1805 >seq66988 Length=1372 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| || ||||| ||||| |||||||| || | ||| |||| || ||||| Sbjct 165 ATGAAGAGTCGATTCCTTCTGAATATTGTAATCCGCAAGGGTTCGTCCGTCTTCGAGCTG 224 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||||||||| ||| | | |||||| || || || Sbjct 225 CTTTCCGGCGAAGATCAGGCGCTGCTGATCGGGCGGAATTCCTTCCTTATCTTGGATCTT 284 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 | ||||| | | || |||||||| | | ||| ||||| || || || || ||| Sbjct 285 CGCCTTGACGTTGTCG--ATGGTATCAGAACTCTCGACCTCGAGAGTGATCGTCTTTCCG 342 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATC 48727 || || |||||||| || ||||||||| Sbjct 343 GTTAGGGTTTTCACGAAGATCTGCATC 369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420624888059993