Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq44513 116 2e-21 seq41248 114 7e-21 seq111147 113 2e-20 seq106733 113 2e-20 seq94089 113 2e-20 seq84940 113 2e-20 seq112771 111 8e-20 seq92175 111 8e-20 seq112404 109 3e-19 seq98592 109 3e-19 seq92364 109 3e-19 seq108419 107 1e-18 seq84331 105 3e-18 seq81860 105 3e-18 seq78779 105 3e-18 seq59172 105 3e-18 seq77066 104 1e-17 seq6302 104 1e-17 seq67949 100 1e-16 seq104507 96.9 2e-15 seq69019 95.1 6e-15 seq121141 93.3 2e-14 seq109075 91.5 8e-14 seq39473 91.5 8e-14 >seq44513 Length=5035 Score = 116 bits (128), Expect = 2e-21 Identities = 77/85 (91%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||||||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 1457 AAAAAT-AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 1399 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||||||||||| |||| Sbjct 1398 CTCTAACCAACTGAGCTAATAGGCC 1374 >seq41248 Length=15114 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||| ||| ||||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 753 AAAAAATAAT-AAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 811 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 812 GACGCTCTAACCAACTGAGCTAATAGGCC 840 >seq111147 Length=3531 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | ||| ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 2934 AAAAATTAAAAATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 2993 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 2994 GCTCTAACCAACTGAGCTAATAGGCC 3019 >seq106733 Length=9289 Score = 113 bits (124), Expect = 2e-20 Identities = 89/105 (85%), Gaps = 7/105 (7%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 8351 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 8292 Query 11513 AACTGAGCTAATGGGCCGTCGACGAT---TGT---GATTTTTCAT 11551 |||||||||||| |||| ||||| | ||| |||||||||| Sbjct 8291 AACTGAGCTAATAGGCC-ACGACGTTACATGTTTCGATTTTTCAT 8248 >seq94089 Length=14592 Score = 113 bits (124), Expect = 2e-20 Identities = 76/86 (88%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | ||||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 8474 AAAAATTGAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 8533 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 8534 GCTCTAACCAGCTGAGCTAATAGGCC 8559 >seq84940 Length=2172 Score = 113 bits (124), Expect = 2e-20 Identities = 78/89 (88%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| |||||||| ||| | | |||||||| ||||||||||||||||||||| Sbjct 1158 AAAAAAAAATATAATTGGCCTATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCAC 1099 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 1098 GACGCTCTAACCAACTGAGCTAATAGGCC 1070 >seq112771 Length=11255 Score = 111 bits (122), Expect = 8e-20 Identities = 79/90 (88%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11436 GAATTAA-TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||||||| | |||||| || ||||||||| | | |||||||| ||||||||||||||| Sbjct 474 GAATTAAGTGAAAAATAAATATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTAT 533 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAAT 11524 |||||||||||||| ||||||||||||||| Sbjct 534 TAGCACGACGCTCTAACCAACTGAGCTAAT 563 >seq92175 Length=2069 Score = 111 bits (122), Expect = 8e-20 Identities = 74/83 (89%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 || ||||| ||||||||| | | |||||||| ||||||||||||||||||||||||||| Sbjct 956 AAGTCAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCT 897 Query 11507 CTRACCAACTGAGCTAATGGGCC 11529 || ||||||||||||||| |||| Sbjct 896 CTAACCAACTGAGCTAATAGGCC 874 >seq112404 Length=3734 Score = 109 bits (120), Expect = 3e-19 Identities = 78/89 (88%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| |||| | ||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 3376 AATATTAAAT-ATATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 3318 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 3317 GACGCTCTAACCAACTGAGCTAATAGGCC 3289 >seq98592 Length=6876 Score = 109 bits (120), Expect = 3e-19 Identities = 73/81 (90%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 718 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 777 Query 11515 CTGAGCTAATGGGCCGTCGAC 11535 |||||||||| |||| ||||| Sbjct 778 CTGAGCTAATAGGCC-TCGAC 797 >seq92364 Length=14262 Score = 109 bits (120), Expect = 3e-19 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||| || ||||||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 10145 TAAATAAAAAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 10086 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||| |||||||||| |||| Sbjct 10085 CGCTCTAACCAGCTGAGCTAATAGGCC 10059 >seq108419 Length=10022 Score = 107 bits (118), Expect = 1e-18 Identities = 74/83 (89%), Gaps = 1/83 (1%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 4693 AATTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 4634 Query 11512 CAACTGAGCTAATGGGCCGTCGA 11534 ||||||||||||| |||| |||| Sbjct 4633 CAACTGAGCTAATAGGCC-TCGA 4612 >seq84331 Length=19959 Score = 105 bits (116), Expect = 3e-18 Identities = 71/79 (90%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 10086 AAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 10027 Query 11511 CCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 10026 CCAACTGAGCTAATAGGCC 10008 >seq81860 Length=10481 Score = 105 bits (116), Expect = 3e-18 Identities = 84/101 (83%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||||||| || | || ||| ||| ||||||||| | | |||||||| ||||||||| Sbjct 5294 AAATATA---TTCAAAATAAACTAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 5350 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||| |||||||||| |||| Sbjct 5351 CGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 5391 Score = 105 bits (116), Expect = 3e-18 Identities = 80/94 (85%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 11437 AATTAATAAA-AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 ||| ||||| ||| ||| ||||||||| | | |||||||| |||||||||||||||| Sbjct 7291 AATGAATAATGAAAGGAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATT 7350 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| |||||||||| |||| Sbjct 7351 AGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 7384 >seq78779 Length=7925 Score = 105 bits (116), Expect = 3e-18 Identities = 76/88 (86%), Gaps = 3/88 (3%) Strand=Plus/Minus Query 11445 AAAAATCA---AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| || ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 3157 AAAAATCATAGAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 3098 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||| |||||||||| |||| Sbjct 3097 ACGCTCTAACCAGCTGAGCTAATAGGCC 3070 >seq59172 Length=4177 Score = 105 bits (116), Expect = 3e-18 Identities = 79/92 (86%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 953 AAAAACTAAACATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 894 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC-GTCGA 11534 ||||| |||| |||||||||| |||| ||||| Sbjct 893 GCTCTAACCAGCTGAGCTAATAGGCCTGTCGA 862 >seq77066 Length=5597 Score = 104 bits (114), Expect = 1e-17 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || |||| |||| | |||||||||| | |||||||| ||||||||||||||||| Sbjct 1702 AAATAATTAAAAGGTTATTTGGCCCATGCAGTCCTCGAACCTGCGACCTTCGCGTTATTA 1761 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||||||| |||| |||||||||| ||||||| Sbjct 1762 GCACGACGCTCTAACCAGCTGAGCTAATAGGCCGTC 1797 >seq6302 Length=5760 Score = 104 bits (114), Expect = 1e-17 Identities = 87/108 (81%), Gaps = 7/108 (6%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAA-------TTGGCCCATGAAAGGATCGAACCTTCG 11481 |||| || ||||| |||||| ||| |||||||||| | | |||||||| || Sbjct 3164 AAATTTAAAATTATTAAAAAGAAAAAAGAAGATTTGGCCCATGCAGGTCTCGAACCTGCG 3105 Query 11482 ACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||||| |||| |||||||||| |||| Sbjct 3104 ACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 3057 >seq67949 Length=10411 Score = 100 bits (110), Expect = 1e-16 Identities = 74/86 (86%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| || |||| |||||||| | | |||||||| ||||||| ||||||||||||| || Sbjct 3094 AAAATATAAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGCACCAC 3152 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 3153 GCTCTAACCAACTGAGCTAATAGGCC 3178 >seq104507 Length=2686 Score = 96.9 bits (106), Expect = 2e-15 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| |||||||||| |||||||||||||||||| ||||| Sbjct 1119 TTGGCCCATGTACGTTTCGAACCTGCGACCTTCGCCTTATTAGCACGACGCTCTAACCAA 1178 Query 11515 CTGAGCTAAT 11524 |||||||||| Sbjct 1179 CTGAGCTAAT 1188 >seq69019 Length=12275 Score = 95.1 bits (104), Expect = 6e-15 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 11449 ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCT 11508 || || |||||||||| | | |||||||| ||||||||||||||||| || |||||||| Sbjct 7014 ATGAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTACCATGACGCTCT 6955 Query 11509 RACCAACTGAGCTAATGGGCC 11529 |||| |||||||||| |||| Sbjct 6954 AACCAGCTGAGCTAATAGGCC 6934 >seq121141 Length=1551 Score = 93.3 bits (102), Expect = 2e-14 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || |||||| |||| ||||||||| | | |||||||| ||||||| |||||||||||| Sbjct 1470 AAAAAAAAAGCAAACATGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGCA 1529 Query 11500 CGACGCTCTRACCAACTGAGCT 11521 | ||||||| |||||||||||| Sbjct 1530 CCACGCTCTAACCAACTGAGCT 1551 >seq109075 Length=4954 Score = 91.5 bits (100), Expect = 8e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 ||||| |||||| | | |||||||| ||| ||||||||||||||||||| ||||| ||| Sbjct 4013 AATTGTCCCATGCAGGTCTCGAACCTGCGAACTTCGCGTTATTAGCACGATGCTCTAACC 4072 Query 11513 AACTGAGCTAAT 11524 |||||||||||| Sbjct 4073 AACTGAGCTAAT 4084 >seq39473 Length=11423 Score = 91.5 bits (100), Expect = 8e-14 Identities = 87/111 (78%), Gaps = 7/111 (6%) Strand=Plus/Plus Query 11421 ATCCAGGGAAATATAGAATTAATA-AAAAATCAAA------TTGGCCCATGAAAGGATCG 11473 ||||| | | || || ||||| || |||||| ||| |||||||||| | | ||| Sbjct 9857 ATCCAAGTACATTTAAAATTATTAGAAAAATAAAAATAATTTTGGCCCATGCAGGTCTCG 9916 Query 11474 AACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAAT 11524 ||||| |||||| | ||||||||||| ||||||| ||||||||||||||| Sbjct 9917 AACCTATGACCTTTGAGTTATTAGCACAACGCTCTAACCAACTGAGCTAAT 9967 Score = 89.7 bits (98), Expect = 3e-13 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 11474 AACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 9668 AACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 9723 Lambda K H 0.637 0.409 0.918 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261102417580468