Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq69051 163 4e-36 seq30321 150 3e-32 seq102071 149 1e-31 seq14491 134 2e-27 seq46705 131 3e-26 seq97437 91.5 2e-14 >seq69051 Length=10337 Score = 163 bits (180), Expect = 4e-36 Identities = 176/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || || ||||| ||||| |||||||||||| ||||||| || ||||| ||| Sbjct 2047 GATAACATTCAGGGGATCACGAAGCCGGCTATCCGTCGTTTGGCTCGCCGAGGTGGCGTC 1988 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| | ||| | |||| ||||||| || | |||| | |||||||| || || Sbjct 1987 AAGCGCATTAGCGGACTCATCTACGAAGAGACGCGCGGTGTTCTCAAGATCTTTCTGGAG 1928 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | |||||| || |||||| ||||||||| ||||| ||||||||| || Sbjct 1927 AATGTCATTCGTGATGCCGTCACCTATACTGAGCACGCTCGCCGTAAAACTGTCACCGCC 1868 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||||| | || ||||| |||| | || || |||| | ||||||||||| Sbjct 1867 ATGGATGTTGTGTATGCTCTGAAGAGGCAGGGGCGTACTCTCTATGGTTTTGG 1815 >seq30321 Length=12551 Score = 150 bits (166), Expect = 3e-32 Identities = 190/261 (73%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | ||| || ||||||||||| || ||||| ||||| || ||| Sbjct 1385 GCGAAGCGCCATCGGAAGGTTCTCCGCGATAACATCCAGGGCATCACAAAGCCGGCCATC 1444 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||||||||| ||||| || |||||||| || |||| || | || ||||||| Sbjct 1445 CGTCGTCTGGCTCGCCGTGGCGGTGTCAAGCGAATCAGTGGACTGATTTACGAAGAGACG 1504 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||||| ||||| | | || |||| ||| || | ||| |||||| Sbjct 1505 CGTGGAGTGCTGAAGATTTTCCTTGAAAATGTGATCCGTGACGCCGTTACCTACACCGAG 1564 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || ||||| ||||| | |||||| | || ||||| | || | || ||| Sbjct 1565 CACGCCCGCCGCAAGACGGTCACGGCGATGGATGTGGTTTATGCTCTCAAGAGGCAGGGC 1624 Query 16673 CGTAAGATTTATGGTTTTGGA 16693 || | | || ||||||||| Sbjct 1625 CGCACCCTCTACGGTTTTGGA 1645 >seq102071 Length=8487 Score = 149 bits (164), Expect = 1e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| |||| || | |||||||| || |||||||| |||||||| || Sbjct 6899 GCAAAGCGTCACCGCAAGGTGCTGAGGGATAACATTCAGGGAATCACAAAGCCAGCCATT 6840 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||||||||| || || ||||| || || | |||| ||||||| Sbjct 6839 CGCCGTTTGGCTCGTCGTGGCGGTGTTAAGCGCATCAGCGGCCTCATCTACGAAGAGACG 6780 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || | |||||||| || ||| || || | || ||| || ||| |||||| Sbjct 6779 CGCGGCGTCCTCAAGATCTTTCTGGAGAATGTCATTCGCGACGCTGTCACCTACACCGAG 6720 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || || || ||||| |||||||| |||| ||||| ||||| | || || Sbjct 6719 CACGCTCGCCGGAAAACCGTCACTGCCATGGATGTCGTGTATGCGTTGAAGAGGCAGGGG 6660 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| ||||||||||||| Sbjct 6659 CGTACTCTTTATGGTTTTGG 6640 >seq14491 Length=6511 Score = 134 bits (148), Expect = 2e-27 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||||||||| ||||| ||||| || || || ||||| ||||| ||||| || || Sbjct 2763 GATAACATCCAAGGCATCACAAAGCCGGCGATTCGCCGTCTTGCTCGCCGTGGCGGCGTA 2822 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || | |||||||||||| ||||| ||| | || || ||||| || Sbjct 2823 AAGCGTATCAGCGGTCTCATCTATGAAGAGACTCGTGGCGTTCTCAAAATATTCCTTGAG 2882 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | |||||| | ||| || || ||| ||||| |||||| || ||||| ||||| || Sbjct 2883 AACGTTATTCGTGACGCCGTCACCTACACCGAACACGCTCGCCGGAAGACGGTCACTGCC 2942 Query 16640 ATGGATATCGTCTATGC 16656 ||||| | || ||||| Sbjct 2943 ATGGACGTGGTTTATGC 2959 >seq46705 Length=12793 Score = 131 bits (144), Expect = 3e-26 Identities = 192/272 (71%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | || |||||||||||||||| ||||| ||||| || || Sbjct 4765 CGCCAAGCGTCACCGTAAGGTGCTGAGAGATAACATCCAAGGCATCACAAAGCCGGCGAT 4824 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || |||||||| || ||||| || ||||||||| || || | |||| || |||| Sbjct 4825 ACGCCGTCTGGCCCGCCGTGGCGGCGTCAAGCGTATCAGCGGTCTCATCTACGAGGAGAC 4884 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || | ||||||||||| ||| || |||| ||| || || ||| || || Sbjct 4885 ACGTGGCGTCCTTAAGATCTTCCTGGAGAATGTGATCCGTGACGCCGTCACCTACACTGA 4944 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || || || || || | |||||| |||| || || | || | || || Sbjct 4945 GCACGCTCGCCGGAAAACCGTAACGGCGATGGATGTCGTTTACGCTCTCAAGAGACAGGG 5004 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 ||| | | |||||||| || | ||| ||| Sbjct 5005 CCGAACTCTCTATGGTTTCGGTGGCTAAGCTT 5036 >seq97437 Length=7446 Score = 91.5 bits (100), Expect = 2e-14 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 16511 GGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATC 16570 || ||||| ||| | || ||| ||| | || || |||| || | || | ||||| Sbjct 7437 GGCGGAGTGAAGAGGATCAGTGGTTTGATATACGAGGAGACGCGGGGGGTGCTCAAGATA 7378 Query 16571 TTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACT 16630 |||||| ||| ||| ||| || || || ||| ||||||||||||| | ||||| Sbjct 7377 TTCCTCGAGAACGTAATCAGAGACGCCGTCACCTACACCGAGCACGCTAGGAGGAAGACG 7318 Query 16631 GTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTT 16690 |||||| |||||||| | || || || | || || || ||||||| | ||||||||| Sbjct 7317 GTCACCGCCATGGATGTTGTTTACGCTCTCAAGCGCCAGGGCCGTACTTTGTATGGTTTT 7258 Query 16691 GGAAGTTAATCTT 16703 || ||| || || Sbjct 7257 GGTGGTTGATTTT 7245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78963660946149