Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq115592 174 2e-38 seq31467 154 2e-32 seq99465 138 1e-27 seq85463 132 6e-26 seq71831 131 2e-25 seq42107 105 8e-18 seq110764 96.9 4e-15 seq100051 89.7 6e-13 seq71912 86.0 8e-12 >seq115592 Length=218 Score = 174 bits (192), Expect = 2e-38 Identities = 160/201 (80%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 138436 TTGGTGG-TGCTCTGCTCTGTGCTATTCATGGTGCTACAGTAGAAAATACTTTGTATGAA 138494 |||| || |||| |||| || ||||||||||||||||| |||||||||||||| | |||| Sbjct 204 TTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAA 145 Query 138495 GATGGCGAACAATCAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTAT 138554 ||||| || ||||||| || || ||| | || ||||||| |||||||| ||| Sbjct 144 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCCGAAGAAACTTAT 85 Query 138555 TCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAG 138614 || ||||| ||||||||||| | ||||| ||||||||||| |||||||| ||||| Sbjct 84 TCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAA 25 Query 138615 CGTTGGCTTCACTTCTTTATG 138635 |||||| | || ||||||||| Sbjct 24 CGTTGGTTACATTTCTTTATG 4 >seq31467 Length=18065 Score = 154 bits (170), Expect = 2e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 135926 GGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGGATCTCTTGTCACC 135985 || || ||||| || ||||| || || || ||| |||||||||||| || | || || Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 135986 TCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGGTTACAAGTTCGGT 136045 |||||| | | | || || || || ||||| || | ||||||| | |||| Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 136046 CAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTC 136105 ||||| ||||| ||||| || || || || |||||||||||||| | || |||||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 136106 CAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTTG 136158 |||||||| |||||||||||||||||| ||||||| || || |||||||| Sbjct 5298 CAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq99465 Length=4513 Score = 138 bits (152), Expect = 1e-27 Identities = 218/311 (70%), Gaps = 6/311 (2%) Strand=Plus/Plus Query 135793 TGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCAT 135852 ||||||| || |||||| |||| ||||| ||| |||||||||||| | || || Sbjct 2945 TGTTTTCTTGATCTACCAAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAAT 3004 Query 135853 TTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCC 135912 |||| | ||||| |||| |||| |||| ||| |||| || || || ||||| ||||| Sbjct 3005 TTCTTGTACTTTCAACTTCATGATTGTATTCTAGGCTGAGCATAATATTCTTATGCA--- 3061 Query 135913 TTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGG 135972 | || |||| || || || || || |||| || || || ||| |||||||||||| Sbjct 3062 --TTCATATGTGAGGCGTAGCGGGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGG 3119 Query 135973 ATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGG 136032 || | || || |||||| | | | | || || || ||| | || | || Sbjct 3120 TTCCTTGGTAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGG 3179 Query 136033 TTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGG 136092 |||||| |||||||| | | |||| |||| || || || ||||| |||||||||| || Sbjct 3180 TTACAAATTCGGTCAGGGA-AAGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGG 3238 Query 136093 TCGTCTGATCT 136103 || |||||| Sbjct 3239 CCGATTGATCT 3249 >seq85463 Length=6098 Score = 132 bits (146), Expect = 6e-26 Identities = 130/165 (79%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 136078 TCATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCT 136137 |||||||||||| || || |||||||||||||||| ||| |||||||||||||| | Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 136138 ACACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATC 136197 |||||| |||| |||||||||||||| || ||||| ||||| ||| || | ||||| Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAG--GTATC 4134 Query 136198 TACG--ATGGCGTTCAACCTCAATGGATTCAACTTCAACCAGTCC 136240 || ||||| ||||| || ||||| ||||| || ||| | ||| Sbjct 4135 AGCGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCC 4179 >seq71831 Length=3823 Score = 131 bits (144), Expect = 2e-25 Identities = 218/311 (70%), Gaps = 3/311 (1%) Strand=Plus/Minus Query 135793 TGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCAT 135852 ||||||| || | ||||| |||| ||||| ||| |||||||||||| || || || Sbjct 978 TGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAAT 919 Query 135853 TTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCC 135912 |||| | ||||| |||| |||| |||| || |||| || ||| ||||||| ||| | || Sbjct 918 TTCTTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCAC-ACATTCTTATGTACCC 860 Query 135913 TTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGG 135972 || || ||||| | || ||| | || | || || || || ||| || ||||||||| Sbjct 859 ATTTCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGG 800 Query 135973 ATCTCTTGTC-ACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATG 136031 || |||| | || |||||| | | | | || || || ||||| || | | Sbjct 799 TTC-CTTGGCAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAG 741 Query 136032 GTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCG 136091 | |||| || ||||||| |||| ||||| || || | | |||||||||||||| | Sbjct 740 GATACAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTG 681 Query 136092 GTCGTCTGATC 136102 | || ||||| Sbjct 680 GCCGATTGATC 670 >seq42107 Length=2384 Score = 105 bits (116), Expect = 8e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 135705 TGGGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTT 135764 ||||||| |||||||| || || ||| |||||||||||||||||||| ||| || | Sbjct 1375 TGGGTCGTGAGTGGGAGCTTAGTTTCCGTTTGGGTATGCGCCCTTGGATTGCTGTTGCAT 1434 Query 135765 ACTCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCC 135810 | ||||| |||||||| |||| ||| ||||||||| || ||||||| Sbjct 1435 ATTCAGCTCCTGTTGCAGCTGTTACCGCTGTTTTCTTGATCTACCC 1480 >seq110764 Length=2751 Score = 96.9 bits (106), Expect = 4e-15 Identities = 88/109 (81%), Gaps = 4/109 (4%) Strand=Plus/Plus Query 136130 CGTTCGCTACACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTG 136189 |||||| ||||||| ||||| |||||||||||||| || ||||||||||| |||| | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 136190 GGCGTATC--TACGATGGCGTTCAACCTCAATGGATTCAACTTCAACCA 136236 | ||||| || ||||| |||||||| || || ||||| |||||||| Sbjct 1600 G--GTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq100051 Length=9184 Score = 89.7 bits (98), Expect = 6e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 136098 TGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGCTT 136157 |||||||| ||||||| |||||||| ||||||||| ||||||| ||||| |||||| Sbjct 2492 TGATCTTCTAATATGCTAGTTTCAACAATTCTCGTTCGTTACACTTCTTCCTAACTGCTT 2433 Query 136158 GGCCTGTTGTCGGTATCTGGTT 136179 ||||||| | ||||||||||| Sbjct 2432 GGCCTGTAATGGGTATCTGGTT 2411 >seq71912 Length=2485 Score = 86.0 bits (94), Expect = 8e-12 Identities = 114/157 (73%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 138701 ACGAGCGTATGATTTC-GTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGAGA 138759 ||| || ||||||||| || || || ||||||||||| || |||||| | |||| |||| Sbjct 1572 ACGTGCTTATGATTTCCGTTTCTCAGGAAATTCGTGCCGCGGAAGATTCAAAATTTGAGA 1513 Query 138760 CCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGTGG 138819 | || |||||||| || ||||| | || |||||| | | || |||| || || | Sbjct 1512 CTTTTTACACCAAAAATATTCTATTAAACGAAGGTATTCATGTTTGGACAGCGACTCAAG 1453 Query 138820 ATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGT 138856 |||| | | | ||||| || | || ||||||| || Sbjct 1452 ATCAGCATAATGAAAATCTTATATTCTCTGAAGAGGT 1416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627010403747200