Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq99465 140 9e-29 seq71831 131 5e-26 seq85463 114 4e-21 >seq99465 Length=4513 Score = 140 bits (154), Expect = 9e-29 Identities = 216/306 (71%), Gaps = 7/306 (2%) Strand=Plus/Plus Query 19713 TTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTC 19771 ||||| | | |||| | |||| ||||| |||||| |||||||||||||| || || || Sbjct 2948 TTTCTTGATCTACCAAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATTTC 3007 Query 19772 TGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTT 19831 | ||||||| ||||| ||| | |||||| | || || || ||||| |||||||| | Sbjct 3008 TTGTACTTTCAACTTCATGATTGTATTCTAGGCTGAGCATAATATTCTTATGCA-----T 3062 Query 19832 CCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAG 19891 || ||| || || || || ||||||| || || || ||| ||||||||| || Sbjct 3063 TCATATGTGAGGCGTAGCGGGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGTTC 3122 Query 19892 TTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTA 19951 ||||| ||||| | |||| | |||| || || ||| | | || | || || Sbjct 3123 CTTGGTAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGTTA 3182 Query 19952 TAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAG 20011 || ||||| | || |||| | |||||||| || |||||| | || |||||||| | Sbjct 3183 CAAATTCGGTC-AGGGAAAGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGCCG 3241 Query 20012 ATTGAT 20017 |||||| Sbjct 3242 ATTGAT 3247 >seq71831 Length=3823 Score = 131 bits (144), Expect = 5e-26 Identities = 214/306 (70%), Gaps = 2/306 (1%) Strand=Plus/Minus Query 19713 TTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTC 19771 ||||| | |||||||| |||| ||||| |||||| ||||||||||||||| || || || Sbjct 975 TTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATTTC 916 Query 19772 TGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTT 19831 | ||||||| ||||| ||| | ||||| | || || ||| | || |||||| | || || Sbjct 915 TTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCAC-ACATTCTTATGTACCCATT 857 Query 19832 CCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAG 19891 || ||| | | || ||| | |||| || || || || ||| || |||||| || Sbjct 856 TCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGTTC 797 Query 19892 TTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTA 19951 |||| ||||| | |||| | |||| || || ||| ||| || | || || Sbjct 796 CTTGGCAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGATA 737 Query 19952 TAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAG 20011 | || | ||||| |||| || |||||||| | | || || || |||||||| | Sbjct 736 CAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGCCG 677 Query 20012 ATTGAT 20017 |||||| Sbjct 676 ATTGAT 671 >seq85463 Length=6098 Score = 114 bits (126), Expect = 4e-21 Identities = 172/243 (71%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 19995 CACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTA 20054 || || |||||||| ||||||| || ||||||||| |||| | || |||||||| ||| Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 20055 CATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGC 20114 || ||| | || ||| ||| || || || || || ||| | || | | || ||| || Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTGCTA--GGTATCAGC 4137 Query 20115 ACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGG 20173 ||||| ||||| || |||||||| || |||||| | || ||||||||| ||||| | Sbjct 4138 GTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAGT 4197 Query 20174 AAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTAT 20233 || | | |||| |||| | | || | |||||||| || | |||||||| Sbjct 4198 CAAAGT--------CGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTAT 4249 Query 20234 GCA 20236 ||| Sbjct 4250 GCA 4252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144232352238708