Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq99465 111 3e-19 seq71831 89.7 8e-13 seq110764 87.8 3e-12 seq31467 86.0 1e-11 >seq99465 Length=4513 Score = 111 bits (122), Expect = 3e-19 Identities = 211/308 (69%), Gaps = 7/308 (2%) Strand=Plus/Plus Query 211993 TTCCTTGTT-TACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATC 212051 || |||| | |||| | | ||||| || || || || ||||||||| ||| || || Sbjct 2948 TTTCTTGATCTACCAAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCCAGGAATTTC 3007 Query 212052 AGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATT 212111 | || |||||||||||| | |||||| | || || ||||| || |||||||| | Sbjct 3008 TTGTACTTTCAACTTCATGATTGTATTCTAGGCTGAGCATAATATTCTTATGCA-----T 3062 Query 212112 CCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTC 212171 |||||| ||| || || ||| | |||| || | ||||| ||||||||| ||||| Sbjct 3063 TCATATGTGAGGCGTAGCGGGTGTATTCGACGGCTCCCTATTCAGTGCTATGCATGGTTC 3122 Query 212172 TCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTA 212231 | || || ||| | ||| | ||||||| | || | || | ||||| Sbjct 3123 CTTGGTAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAAACTGCTAATGAAGGTTA 3182 Query 212232 CAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAG 212291 ||| ||||| || | | |||| | ||||| ||||| |||||| |||| ||||| || | Sbjct 3183 CAAATTCGGTCAGGGA-AAGAAGCTTATAATATCGTAGCTGCATATGGTTACTTTGGCCG 3241 Query 212292 ACTTATCT 212299 | | |||| Sbjct 3242 ATTGATCT 3249 >seq71831 Length=3823 Score = 89.7 bits (98), Expect = 8e-13 Identities = 204/300 (68%), Gaps = 8/300 (3%) Strand=Plus/Minus Query 211993 TTCCTTG-TTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATC 212051 || |||| |||||||| | ||||| || || | || ||||||||| |||| || || Sbjct 975 TTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATTTC 916 Query 212052 AGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATT 212111 | || |||||||||||| | ||||| | || || || |||| |||||| ||||||| Sbjct 915 TTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCA-CACATTCTTATGTACCCATT 857 Query 212112 CCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTC 212171 |||||| | | || || || | | || || | ||||| || |||||| ||||| Sbjct 856 TCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGTTC 797 Query 212172 TCTTGTTACATCTTC-ACTT--ATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGG 212228 |||| || |||| | || ||| | ||||||| | || || || | || Sbjct 796 -CTTG--GCAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGG 740 Query 212229 TTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGG 212288 |||| || | ||||| |||| || ||||| |||| | || ||||| ||||| || Sbjct 739 ATACAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGG 680 >seq110764 Length=2751 Score = 87.8 bits (96), Expect = 3e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 212332 TTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATC 212391 |||||||||||||| || | |||||||| | || | ||||| || || | |||||| Sbjct 1546 TTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATC 1605 Query 212392 TGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAAT 212434 ||| ||||| ||||||||||| || ||||| |||||||||| Sbjct 1606 AACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAAT 1648 >seq31467 Length=18065 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 212122 GGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACA 212181 || || || ||| | ||||| || | ||||| ||||||||| ||||| | || || Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 212182 TCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGA 212241 ||| | ||| | |||||||| | || || || | ||||||| | ||| Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 212242 CAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTC 212301 ||||| ||||| || ||||| ||||| || || ||||| ||||| | || | |||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 212302 CAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGC 212348 || ||||| ||||||||| | ||||||||||| || || Sbjct 5298 CAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGC 5252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 806323748981080