Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq85463 129 7e-25 seq31467 129 7e-25 seq99465 122 1e-22 seq96029 114 1e-20 seq71831 100 3e-16 seq110764 93.3 5e-14 >seq85463 Length=6098 Score = 129 bits (142), Expect = 7e-25 Identities = 208/300 (69%), Gaps = 22/300 (7%) Strand=Plus/Plus Query 171370 TCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATT 171429 |||||| ||||| || |||| |||||||| ||||| ||| ||||||||||||| || Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 171430 ACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTG 171489 ||||||| |||| |||| | |||||||| || | ||||| || ||| |||||| | Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTGCTA--GGTATCAG 4136 Query 171490 TACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT--GCAAAC 171547 ||||| ||||| || || || ||||| || ||| |||| || || ||| |||| Sbjct 4137 CGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAG 4196 Query 171548 GGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTT 171607 |||| | |||| ||| | | ||| | || |||||||| || |||||| Sbjct 4197 TCAAAG---------TCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTT 4247 Query 171608 ATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGCATCTGCTGAGTCTACAACA 171667 |||| |||| || || | | | ||||||||||| ||| ||| || ||||| Sbjct 4248 ATGC---------ATGCTCATAAATGCTCTCTAGACCTAGCTGCTGTTGAAGCTCCAACA 4298 >seq31467 Length=18065 Score = 129 bits (142), Expect = 7e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 171218 GGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACA 171277 || ||||| ||| | ||||| || || |||||||| ||||| ||||| | || || Sbjct 5478 GGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACT 5419 Query 171278 TCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGA 171337 ||| | | ||| | || || || || || || | || | || || | | ||| Sbjct 5418 TCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATCCGGT 5359 Query 171338 CAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTC 171397 ||||| |||||||| ||||| || || || |||||||| ||||| | |||| |||||| Sbjct 5358 CAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGATCTTC 5299 Query 171398 CAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTG 171446 || ||||| ||||||||||||||||| ||||||||||| || |||| Sbjct 5298 CAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTG 5250 >seq99465 Length=4513 Score = 122 bits (134), Expect = 1e-22 Identities = 194/277 (70%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178 || |||||||||||||| | ||| || || |||| |||||||||||| | || ||| | Sbjct 2979 TTTTCTGATGGTATGCCTCCAGGAATTTCTTGTACTTTCAACTTCATGATTGTATTCTAG 3038 Query 171179 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGT 171238 || || || || || || ||||| | |||||| ||| ||||| ||| | |||| Sbjct 3039 GCTGAGCATAATATTCTTATGCA-----TTCATATGTGAGGCGTAGCGGGTGTATTCGAC 3093 Query 171239 GGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACA 171298 || || |||||||| ||||| ||||| | || || ||| | | ||||| | || Sbjct 3094 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGTAAACC 3153 Query 171299 ACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAAGAAGAAGAAACATATAAC 171358 || || || || | | || | || || || ||||| || | | ||||| | ||||| Sbjct 3154 ACAGAAAATGAAACTGCTAATGAAGGTTACAAATTCGGTCAGGGA-AAGAAGCTTATAAT 3212 Query 171359 ATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCT 171395 || || ||||| |||| ||||| || |||| |||| Sbjct 3213 ATCGTAGCTGCATATGGTTACTTTGGCCGATTGATCT 3249 >seq96029 Length=8464 Score = 114 bits (126), Expect = 1e-20 Identities = 199/288 (69%), Gaps = 1/288 (0%) Strand=Plus/Plus Query 171843 GGATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTA 171902 || ||| |||| || ||||| || ||||||| || | || || || |||||||||| | Sbjct 1621 GGCTGGACTGGCCTATTACTCTTTACTTGTGCCTATTTTGCTATAGG-GGTTGGTTCGCA 1679 Query 171903 GGAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGA 171962 || || ||||| || || |||||||| || ||| | ||| || ||| | || || Sbjct 1680 GGTACAACTTTTGTAACTTCATGGTATACCCATAAATTAGCAAGTTCCTATTTGGAAGGC 1739 Query 171963 GCAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTG 172022 || || ||||| | ||||| || | | || | || | | | ||| | ||||| Sbjct 1740 TGTAATTTCTTAACAACTGCAGTTTCTAGTCTTGCTAATAGTTTAGCGCATTCTTTATTG 1799 Query 172023 TTCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTA 172082 || || ||| | ||||| | |||||||||| || | |||| |||||| || || || Sbjct 1800 TTACTGTGGAGTCCTGAAGTACAAGGAGATTTTACTTGTTGGTGTCAATTGGGGGGTCTG 1859 Query 172083 TGGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATG 172130 |||| || || || | ||||| || ||||| |||||||||||| Sbjct 1860 TGGACTTTGGTTGCTCTGCATGGCACTTTCGGACTAATAGGTTTCATG 1907 >seq71831 Length=3823 Score = 100 bits (110), Expect = 3e-16 Identities = 208/307 (68%), Gaps = 2/307 (1%) Strand=Plus/Minus Query 171089 TTCCTTG-TGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTC 171147 || |||| | || ||| | ||||| || || | |||||||||||| ||||| || || Sbjct 975 TTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATTTC 916 Query 171148 AGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTT 171207 |||| |||||||||||| | || || | || || ||| |||| || ||| |||| || Sbjct 915 TTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCAC-ACATTCTTATGTACCCATT 857 Query 171208 CCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTC 171267 |||||| | | ||||| || | | || || || ||||||| ||||| ||||| Sbjct 856 TCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGTTC 797 Query 171268 TCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTA 171327 | | || ||| | | ||||| | || || || || || | || | || || Sbjct 796 CTTGGCAACTTCTAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGGATA 737 Query 171328 TAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAG 171387 | || | ||||| ||||||| ||||| || | | |||||||| ||||| || | Sbjct 736 CAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGGCCG 677 Query 171388 ATTAATC 171394 ||| ||| Sbjct 676 ATTGATC 670 >seq110764 Length=2751 Score = 93.3 bits (102), Expect = 5e-14 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 171422 CGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATG 171481 ||||| |||||||||||||| |||| | |||||||| || | ||||| || || | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 171482 GGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAAT 171530 |||||| || ||||| |||||||| ||||| ||||| |||||||||| Sbjct 1600 GGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCAAT 1648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569399189978520