Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq111813 102 8e-17 seq99159 91.5 1e-13 seq69221 89.7 5e-13 seq109031 84.2 2e-11 seq55416 84.2 2e-11 >seq111813 Length=4153 Score = 102 bits (112), Expect = 8e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | ||||| || ||| | |||||||| | |||||| |||| | || | Sbjct 1990 ATGCAAATCTTTGTTAAGACACTTACTGGAAAGACAATCACCCTCGAGGTTGAGAGCTCC 1931 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| || | ||||| |||||| ||||| ||||| || ||||| || || Sbjct 1930 GACACCATTGACAACGTCAAGGCTAAGATTCAAGACAAGGAAGGAATTCCTCCTGACCAG 1871 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || | || | || || || || ||||| |||| |||| | | || || || Sbjct 1870 CAGAGGTTGATCTTCGCTGGAAAGCAGCTCGATGATGGCAGAACCCTTGCGGATTACAAT 1811 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 || ||||||||||| ||| ||||||| ||||| | ||| | || |||| Sbjct 1810 ATCCAAAAAGAATCCACTCTCCATCTTGTCCTCTGTCTTCGCGGTGGAA 1762 >seq99159 Length=5808 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 ||||| | || || ||||| |||| || || | |||||| |||| | ||| ||| Sbjct 2717 ATGCAGATCTTCGTGAAAACCCTAACAGGCAAGACAATCACCCTCGAGGTGGAAAGCTCA 2658 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 ||||| ||||| | || || || || ||||| |||||||| ||||| || Sbjct 2657 ---GACACAATCGATAACGTAAAGGCTAAAATCCAGGACAAGGAAGGGATCCCTCCGGAC 2601 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || ||||| | || | | ||||||||||||||||||| | | | | | ||||| Sbjct 2600 CAGCAAAGGTTGATCTTTGCGGGCAAACAACTCGAAGATGGTCGCACCCTTGCAGACTAC 2541 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || ||||| ||||| ||||||| | || ||||| || Sbjct 2540 AACATACAGAAGGAGTCTACCCTCCATTTGGTCCTTCGTCTCAGAGGTGG 2491 >seq69221 Length=10640 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 || |||||||| || || || || || || || || || | | || |||||||| ||| Sbjct 5878 GATAAAGAAGGTATCCCCCCTGACCAGCAGAGGCTTATATTTGCTGGTAAACAACTGGAA 5937 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| ||||| | | || ||||||||||| ||||||||||| || | || || || | Sbjct 5938 GATGGTAGAA-CTTTGGCAGACTATAACATCCAAAAAGAATCAACACTTCACCTTGTTTT 5996 Query 26981 GAGACTTAGAGGAGGAAAAAT 27001 ||| ||||| ||||||| ||| Sbjct 5997 GAGGCTTAGGGGAGGAACAAT 6017 >seq109031 Length=8095 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || || || || || ||||||| | ||| | || Sbjct 77 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACGATCACGCTGGAAGTGGAGAGCTCG 136 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| ||||| | || || ||||| ||||| || || || || || || || Sbjct 137 GACACGATCGATAATGTGAAGGCTAAGATACAGGACAAGGAGGGAATCCCACCGGACCAG 196 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCG-ACTATAA 26947 || || || |||| | ||||||||| || ||||||| ||| | | | ||| |||| || Sbjct 197 CAGAGGCTGATTTTTGCCGGCAAACAGCTAGAAGATGGTAGGA-CTTTGGCGGACTACAA 255 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||| || || ||| | |||||||| || || || | || |||| Sbjct 256 CATTCAAAAGGAGTCGACTTTGCATCTGGTGCTTAGGCTGCGTGGTGGAA 305 >seq55416 Length=9261 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| |||||||| ||||| || || || || | | ||| |||||| | ||| Sbjct 4043 GACAAAGAAGGCATACCTCCTGATCAGCAGAGGCTAATATTTGCCGGTAAACAATTGGAA 3984 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| ||||| | | || || || || || |||||||| || | || || || | Sbjct 3983 GATGGTAGAACCTTGGCAGATTACAATATCCAGAAAGAATCAACACTTCACCTTGTTTTA 3924 Query 26982 AGACTTAGAGGAGG 26995 |||||||| ||||| Sbjct 3923 AGACTTAGGGGAGG 3910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477932481722960