Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq111813 113 4e-20 seq99159 98.7 9e-16 seq55416 96.9 3e-15 seq82767 87.8 2e-12 >seq111813 Length=4153 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || ||| | |||||||| | || ||| |||| || ||| | | Sbjct 1990 ATGCAAATCTTTGTTAAGACACTTACTGGAAAGACAATCACCCTCGAGGTTGAGAGCTCC 1931 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | ||||| |||||| ||||| ||||| || ||||| || || Sbjct 1930 GACACCATTGACAACGTCAAGGCTAAGATTCAAGACAAGGAAGGAATTCCTCCTGACCAG 1871 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || || ||||| ||||| |||| ||||| | | ||||| || Sbjct 1870 CAGAGGTTGATCTTCGCTGGAAAGCAGCTCGATGATGGCAGAACCCTTGCGGATTACAAT 1811 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||||||||| || Sbjct 1810 ATCCAAAAAGAATCCAC 1794 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || | || || || |||||||| | || || | || || ||| | Sbjct 1328 AATGCAGATTTTCATCAAGACTTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGCTC 1269 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| || || | || ||| |||||| ||||| |||||||| ||||| || || Sbjct 1268 CGACACAATTGACAATGTGAAAGCCAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCA 1209 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 ||| | ||||| | | || ||||| |||||||||| | | | || ||| || || | Sbjct 1208 GCAGCGGCTGATATTTGCGGGTAAGCAGCTCGAAGATGGCTGGA-CGCTAGCCGACTACA 1150 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||| || || || || || ||||| | ||| | | ||||||||||| Sbjct 1149 ACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGTTTGAGAGGAGG 1101 >seq99159 Length=5808 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| ||||| ||||||||||| | ||||| | || || ||| | | Sbjct 2033 ATGCAAATCTTTGTTAAAACCTTAACTGGAAAGACCATTACTCTTGAGGTTGAGAGCTCC 1974 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | ||||| ||||| || || || ||||| ||||| ||||| Sbjct 1973 GATACCATAGACAATGTCAAGGCCAAGATCCAAGATAAGGAGGGCATTCCTCCAGATCAG 1914 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||||| || |||||||| ||||| |||| ||| | ||| || ||| Sbjct 1913 CAGAGGTTGATTTTCGCTGGCAAGCAGCTCGATGATGGACGAACACTTGCCGACTACAAC 1854 Query 24171 ATTCAAAAAGAA 24182 || ||||| ||| Sbjct 1853 ATCCAAAAGGAA 1842 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || ||||| || || | || || ||||||| ||| | Sbjct 2261 ATGCAAATCTTTGTTAAGACCTTAACGGGCAAGACAATCACGCTCGAAGTGGAGAGTTCC 2202 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || |||||| ||||| || ||||| || || || || Sbjct 2201 GACACCATCGACAATGTTAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAG 2142 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||| | | || ||||| |||||||||| | | | | ||||| ||| Sbjct 2141 CAGAGATTGATCTTTGCTGGAAAGCAGCTCGAAGATGGCCGCACTCTTGCTGATTACAAC 2082 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| ||||| ||||| Sbjct 2081 ATTCAGAAAGAGTCTAC 2065 >seq55416 Length=9261 Score = 96.9 bits (106), Expect = 3e-15 Identities = 108/143 (76%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 |||||||||||||||||||| ||||| ||||| || || | | ||| || ||| | ||| Sbjct 4043 GACAAAGAAGGCATACCTCCTGATCAGCAGAGGCTAATATTTGCCGGTAAACAATTGGAA 3984 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| |||| | | ||||| || || || |||||||| ||| |||| | || ||| Sbjct 3983 GATGGTAGAACCTTGGCAGATTACAATATCCAGAAAGAATCAACACTTCACCTTGTTTTA 3924 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 ||| | || ||||| ||||| || Sbjct 3923 AGACTTAGGGGAGGTACTATGAT 3901 >seq82767 Length=6942 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/143 (74%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 |||||||||||||||||||| || || ||||| || || | | || || || | ||| Sbjct 3982 GACAAAGAAGGCATACCTCCTGACCAGCAGAGGCTAATATTTGCTGGTAAACAGTTGGAA 3923 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| |||| | | ||||| || || || |||||||| ||| |||| | || ||| Sbjct 3922 GATGGTAGAACCTTGGCAGATTACAATATCCAGAAAGAATCAACACTTCACCTTGTTTTA 3863 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 ||| | |||||||| ||||| || Sbjct 3862 AGACTTAGAGGAGGTACTATGAT 3840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429296775588915