Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq117762 113 4e-20 seq99159 104 2e-17 seq70367 104 2e-17 seq111813 100 3e-16 seq109834 96.9 3e-15 seq95628 91.5 1e-13 seq9177 89.7 5e-13 seq109031 84.2 2e-11 >seq117762 Length=309 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || ||||| | ||| || ||||| || ||||||||||| | Sbjct 28 CCACCACGGAGACGGAGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 87 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| || | |||||||||||| || Sbjct 88 AAGGTGCGTCCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGA 147 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||||| | || | || || | | ||||| Sbjct 148 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGCTCTCGACT 207 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| || || || ||||| || ||||| Sbjct 208 TCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 254 >seq99159 Length=5808 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| || || ||||| | ||| |||||||| || |||||||| || Sbjct 2491 CCACCTCTGAGACGAAGGACCAAATGGAGGGTAGACTCCTTCTGTATGTTGTAGTCTGCA 2550 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || || || ||||| || |||| || | ||||||||||||||| Sbjct 2551 AGGGTGCGACCATCTTCGAGTTGTTTGCCCGCAAAGATCAACCTTTGCTGGTCCGGAGGG 2610 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| |||||| ||| | | || | || || | | || | Sbjct 2611 ATCCCTTCCTTGTCCTGGATTTTAGCCTTTACGTTATCGATTGTGTCTGAGCTTTCCACC 2670 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || || || ||||| ||||| ||||| |||||||| Sbjct 2671 TCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 2717 Score = 93.3 bits (102), Expect = 4e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAAT-CGCT 131066 || || ||||| |||| ||| | ||| | ||||||||||| ||||| ||||| | |||| Sbjct 1579 CCTCCTCGCAACCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCCGCT 1638 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| ||||| ||||||||||| || | || || | |||||||||||| || Sbjct 1639 -AGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGG 1697 Query 131127 GATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 1698 TATCCCTTCCTTGTC 1712 >seq70367 Length=2979 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | ||| || || || | ||||||||| || ||||||||||| || | Sbjct 284 CCACCACGGAGCCTCAGGACCAAGTGCAAGGTCGACTCTTTCTGAATGTTGTAGTCCGCC 225 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || || |||| | | |||||| ||||| || Sbjct 224 AAGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGATCCGGTGGA 165 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||| | | || | ||| |||| | ||||| Sbjct 164 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCGACC 105 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || |||||||| Sbjct 104 TCAAGGGTGATGGTCTTCCCTGTAAGGGTCTTGACAAAGATCTGCAT 58 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131005 GAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCG 131064 |||||||| || | || || || | || | ||| |||||||| || ||||||||||| Sbjct 515 GAGCCACCACGGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCA 456 Query 131065 CTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGA 131124 || ||| || || || |||||||| || || |||| || | |||||| ||||| Sbjct 455 GCCAAGGTACGGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGT 396 Query 131125 GGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCG 131184 ||||| || || ||||| || || ||| | | || | || |||| | || Sbjct 395 GGGATACCCTCCTTGTCCTGAATCTTGGCCTTTACATTGTCAATTGTGTCGGAGCTTTCA 336 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || | ||| | |||||| ||||| || || || || ||||||||||| Sbjct 335 ACCTCTAGGGTGATGGTTTTCCCGGTAAGGGTCTTCACAAAAATCTGCAT 286 >seq111813 Length=4153 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 3/229 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCG--C 131065 ||||| || | ||||||||| | ||| | ||| || |||||||||||| ||||||| | Sbjct 1329 CCACCACGAAGACGCAGCACGAGATGAAGGGTGGATTCCTTTTGAATGCTGTAATCTGCC 1388 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | || | || | || || || ||||| || || ||| || || ||||| || || | Sbjct 1389 TAGTGTTCTGCCA-TCTTCCAGTTGCTTCCCAGCAAAGAAAAATCGTTGCTGCTCGGGGG 1447 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| |||||||| || |||||| ||||| | || | ||| || | | || | Sbjct 1448 GGATCCCTTCTTTATCTTAGATTTTGGCCTTGACGTTGTCGATAGTGTCTGAGCTTTCAA 1507 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || | |||||||| |||||||||||||| Sbjct 1508 CTTCAAGGGTTATCGTCTTGCCAGCAAGAGTTTTCACGAAAATCTGCAT 1556 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || | |||||||||||| | ||| | |||||||||||| || |||||||| ||| Sbjct 1101 CCTCCTCTCAAACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCT 1160 Query 131068 ATGGTGC-GCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | || | || | || || |||||||| || || | || | ||||||||||||||||| Sbjct 1161 AGCGTCCAGCCA-TCTTCGAGCTGCTTACCCGCAAATATCAGCCGCTGCTGGTCCGGAGG 1219 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 || ||||| ||||| ||| | | || || | | || | || |||| | ||| | Sbjct 1220 AATGCCTTCCTTGTC-CTGAATCTTGGCTTTCACATTGTCAATTGTGTCGGAGCTCTCCA 1278 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || | ||| || | |||||||||||| Sbjct 1279 CCTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGATGAAAATCTGCAT 1327 >seq109834 Length=6695 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 |||||| ||||||||||| ||| |||| | | ||||||||||||||| ||||| || || Sbjct 4 GTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGAATTCCCTCCTT 63 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || ||||| | || | || || | | ||| | |||| ||| | Sbjct 64 GTCCTGGATCTTAGCCTTGACGTTATCTATGGTGTCCGAGCTCTCCACCTCGAGGGTGAT 123 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || ||||| || ||||| ||||| |||||||| Sbjct 124 GGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 159 >seq95628 Length=1400 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131022 CAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTC 131081 |||||| || || | ||| |||||||| || |||||||||||| || || || || Sbjct 219 CAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAACGTACGACCATC 160 Query 131082 CTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTC 131141 ||| |||||||| || || ||||||| | |||||| ||||| || || || || ||||| Sbjct 159 CTCGAGCTGCTTCCCGGCAAAGATTAACCTCTGCTGATCCGGGGGAATCCCCTCCTTGTC 100 Query 131142 GGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT 131201 || ||| ||| | | || | || || | | || | || | ||| | ||| Sbjct 99 CTGAATCTTCGCCTTCACATTGTCGATCGTGTCAGAGCTTTCAACCTCCAAGGTGATGGT 40 Query 131202 TTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || ||||| || || || ||||| || ||||| Sbjct 39 CTTCCCGGTCAGTGTCTTGACGAAGATTTGCAT 7 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| || | ||| || || | || | ||| ||||| || || |||||||| || Sbjct 463 AGCCACCACGGAGACGGAGGACAAGGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 404 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||| | ||||| | |||||| || || |||| || | |||||||||||| | Sbjct 403 CAAGGGTCCTTCCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTG 344 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 |||| || || ||||| || || ||||| | || | ||||| | | ||| | Sbjct 343 GGATACCCTCCTTGTCCTGAATCTTAGCCTTGACATTGTCAATGGTATCCGAGCTCTCCA 284 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | ||| | ||| || || || || || || || |||||||||||| || Sbjct 283 CCTCCAAGGTGATGGTCTTCCCTGTCAGTGTCTTGACAAAAATCTGCATGCCT 231 >seq9177 Length=5018 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 131111 GCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAG 131170 ||||||||||||| ||||||||||| ||||| ||| ||| ||||| | || | | Sbjct 5018 GCTGCTGGTCCGGCGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGG 4959 Query 131171 TATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCT 131230 |||||| ||||| |||| |||| || || |||||||| ||||| ||||| |||| Sbjct 4958 TATCGGAACTCTCGACCTCGAGAGTAATCGTCTTTCCGGTTAGGGTTTTGACGAAGATCT 4899 Query 131231 GCAT 131234 |||| Sbjct 4898 GCAT 4895 >seq109031 Length=8095 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| | ||||| | ||| | ||||||||||||||||||||||| || | Sbjct 303 CCACCACGCAGCCTAAGCACCAGATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGCC 244 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || | || |||||||| ||||| || | || | | |||||||||||| ||| Sbjct 243 AAAGTCCTACCATCTTCTAGCTGTTTGCCGGCAAAAATCAGCCTCTGCTGGTCCGGTGGG 184 Query 131128 ATTCCTTCTTTGTC 131141 ||||| || ||||| Sbjct 183 ATTCCCTCCTTGTC 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471293021781120