Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq111813 114 1e-20 seq109031 113 4e-20 seq70367 105 5e-18 seq95628 104 2e-17 >seq111813 Length=4153 Score = 114 bits (126), Expect = 1e-20 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||||| | | ||| |||| ||| || || |||||||| || |||||||||||||| Sbjct 1100 CCCTCCTCTCAAACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 1159 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | || | | || || | || || |||||| | || |||||||| |||||| ||| Sbjct 1160 TAGCGTCCAGCCATCTTCGAGCTGCTTACCCGCAAATATCAGCCGCTGCTGGTCCGGAGG 1219 Query 16828 CACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||| || ||||| || || ||| ||||| | | | | |||||| | |||| Sbjct 1220 AATGCCTTCCTTGTCCTGAATCTTGGCT--TTCACATTGTCAATTGTGTCGGAGCTCTCC 1277 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| |||||||| ||||| |||| || |||| |||||||||||| Sbjct 1278 ACCTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGATGAAAATCTGCATT 1328 >seq109031 Length=8095 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || |||| ||||| || ||||||||||| ||||||||||| ||| Sbjct 303 CCACCACGCAGCCTAAGCACCAGATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGCC 244 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || || | |||||||| ||| |||| |||| ||| |||||| || Sbjct 243 AAAGTCCTACCATCTTCTAGCTGTTTGCCGGCAAAAATCAGCCTCTGCTGGTCCGGTGGG 184 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| || | |||||| | | | ||||| | |||| | Sbjct 183 ATTCCCTCCTTGTCCTGTATCTTAGCCTTCACATTATCGATCGTGTCCGAGCTCTCCACT 124 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || || ||||||| || |||||||| |||||||| Sbjct 123 TCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 77 >seq70367 Length=2979 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || |||||||| |||| |||| || ||||| || || ||||||||||| ||| Sbjct 284 CCACCACGGAGCCTCAGGACCAAGTGCAAGGTCGACTCTTTCTGAATGTTGTAGTCCGCC 225 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || || || ||| | ||||||| ||| || ||| || Sbjct 224 AAGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGATCCGGTGGA 165 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| || || || |||||| | | | | ||||||| | ||| Sbjct 164 ATGCCTTCCTTGTCCTGGATCTTGGC--CTTCACGTTGTCAATAGTGTCGGAGCTCTCGA 107 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || || || || |||||||| |||||||| Sbjct 106 CCTCAAGGGTGATGGTCTTCCCTGTAAGGGTCTTGACAAAGATCTGCAT 58 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||| || |||| ||| | | || |||| || Sbjct 488 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCATCTTCCAGCTGC 429 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || | || ||| || ||| || | ||||| ||||| ||| | Sbjct 428 TTCCCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGAATCTTG 369 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | |||||| | || || | |||||||||||| ||||| Sbjct 368 GCCTTTACATTGTCAATTGTGTCGGAGCTTTCAACCTCTAGGGTGATGGTTTTCCCGGTA 309 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || || |||||||||||||| Sbjct 308 AGGGTCTTCACAAAAATCTGCAT 286 >seq95628 Length=1400 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || |||||| |||| ||||| ||||||||||| || |||||||| |||||| Sbjct 233 CCTCCTCTTAACCTCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 174 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | ||||| | || || || ||| | || | || ||| || ||| || Sbjct 173 AACGTACGACCATCCTCGAGCTGCTTCCCGGCAAAGATTAACCTCTGCTGATCCGGGGGA 114 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||| | | |||||| | | | | ||||| | || Sbjct 113 ATCCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCGTGTCAGAGCTTTCAACC 54 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| || |||||||| || ||||| || || ||||| Sbjct 53 TCCAAGGTGATGGTCTTCCCGGTCAGTGTCTTGACGAAGATTTGCAT 7 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||| || || ||||||||||| || | ||| | | |||||||| || Sbjct 437 TGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAACTGC 378 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || | || ||| |||||| || | ||||| ||||| ||| | Sbjct 377 TTCCCAGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGAATCTTA 318 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | || || | |||| |||| ||||||||| || || ||| Sbjct 317 GCCTTGACATTGTCAATGGTATCCGAGCTCTCCACCTCCAAGGTGATGGTCTTCCCTGTC 258 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || || ||||||||||||||||| Sbjct 257 AGTGTCTTGACAAAAATCTGCAT 235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404485719339070