Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq96170 136 3e-27 seq13665 100 2e-16 seq111813 95.1 8e-15 seq99159 95.1 8e-15 seq66988 89.7 3e-13 seq96171 87.8 1e-12 seq109031 82.4 5e-11 >seq96170 Length=3516 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||| |||||||||||| || |||||||| Sbjct 2126 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGGTAGTAGATAGGGACAGTGGGAATCTCGT 2185 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 2186 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 2220 >seq13665 Length=2139 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||| ||| ||||||||||||| ||| ||||||||| | || || |||||||| Sbjct 353 AAGCCCGGTCCATTGGCTGTGGTTTTGCTGGATAGTAGACAAGGACAATGGGAATCTCGT 294 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||| ||||||| |||| ||||| Sbjct 293 TAATCCATTCATGCGCATCACTAACTAGAGGACGA 259 >seq111813 Length=4153 Score = 95.1 bits (104), Expect = 8e-15 Identities = 166/237 (70%), Gaps = 10/237 (4%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||||| ||| | |||||| ||| ||||||||||| |||||| Sbjct 1325 CATT-CCACCACGAAGACGCAGCACGAGATGAAGGGTGGATTCCTTTTGAATGCTGTAAT 1383 Query 38146 CAGACAAAACACGTTCG----TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGA 38201 | | | | |||| || || | ||| || || ||||| | | ||||| || Sbjct 1384 CTGCCTAGT---GTTCTGCCATCTTCCAGTTGCTTCCCAGCAAAGAAAAATCGTTGCTGC 1440 Query 38202 TCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA 38261 |||| ||||| |||||||| || ||||| ||| || || | || ||| ||| Sbjct 1441 TCGGGGGGGATCCCTTCTTTATCTTAGATTTTGGCCTTGACGTTGTCGATAGTGTCTGAG 1500 Query 38262 CTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG-GTTTTCACGAATATCTGCAT 38317 ||||||||||| | || || || || || | |||| ||||||||||| |||||||| Sbjct 1501 CTTTCAACTTCAAGGGTTATCGTCTTGCCAG-CAAGAGTTTTCACGAAAATCTGCAT 1556 >seq99159 Length=5808 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || |||| ||| |||||||||| ||||||||| |||||| ||||||||||| || | Sbjct 1579 CCTCCTCGCAACCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCCGCT 1638 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| | || || | || || || ||||| || | | || || || | ||| Sbjct 1639 AGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGT 1698 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| ||||| ||| || |||||||| | | || || ||| ||||| Sbjct 1699 ATCCCTTCCTTGTCTTGAATCTTAGCTTTCACATTATCAATTGTGTCCGAACTCTCAACC 1758 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || ||||| ||||| | ||| || || || |||||||| Sbjct 1759 TCCAGGGTTATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1805 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||| | ||| | |||||||| || || |||||| || || ||||| || | Sbjct 2489 TACCACCTCTGAGACGAAGGACCAAATGGAGGGTAGACTCCTTCTGTATGTTGTAGTCTG 2548 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | || | || || | |||||| || ||||| || | | ||| || || | | Sbjct 2549 CAAGGGTGCGACCATCTTCGAGTTGTTTGCCCGCAAAGATCAACCTTTGCTGGTCCGGAG 2608 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| |||||| ||||| ||| || || | || || ||| ||||| | Sbjct 2609 GGATCCCTTCCTTGTCCTGGATTTTAGCCTTTACGTTATCGATTGTGTCTGAGCTTTCCA 2668 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || || | |||||||||||| |||||||| Sbjct 2669 CCTCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 2717 >seq66988 Length=1372 Score = 89.7 bits (98), Expect = 3e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 ||||||||| ||||| |||||||||||||| | | ||| |||| || | || Sbjct 165 ATGAAGAGTCGATTCCTTCTGAATATTGTAATCCGCAAGGGTTCGTCCGTCTTCGAGCTG 224 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 |||||||| || || ||||| || ||||||| || | ||||| || || || || Sbjct 225 CTTTCCGGCGAAGATCAGGCGCTGCTGATCGGGCGGAATTCCTTCCTTATCTTGGATCTT 284 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||| || || | || ||||| ||| || || || | || || || || || || Sbjct 285 CGCCTTGACGTTGTCGATGGTATCAGAACTCTCGACCTCGAGAGTGATCGTCTTTCCGGT 344 Query 38294 CAAGGTTTTCACGAATATCTGCATGTT 38320 | |||||||||||| |||||||| || Sbjct 345 TAGGGTTTTCACGAAGATCTGCATCTT 371 >seq96171 Length=2850 Score = 87.8 bits (96), Expect = 1e-12 Identities = 56/60 (93%), Gaps = 1/60 (2%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCT-TTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||| ||| Sbjct 1107 CTCTCTCTGCAAAGTTCTATTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTGTCG 1166 >seq109031 Length=8095 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||| ||| | ||| |||||||||||| ||||| || | |||| | | || || Sbjct 286 CACCAGATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGCCAAAGTCCTACCATCTTC 227 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 || ||||| |||||||| || || | || || || | |||| || || |||||| Sbjct 226 TAGCTGTTTGCCGGCAAAAATCAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTG 167 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 || || ||||||||| | || || || || || ||||| | || || || || Sbjct 166 TATCTTAGCCTTCACATTATCGATCGTGTCCGAGCTCTCCACTTCCAGCGTGATCGTCTT 107 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || || || || |||||||| Sbjct 106 GCCGGTCAAAGTCTTGACAAAGATCTGCAT 77 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334449203957183