Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq109031 143 2e-29 seq117762 107 2e-18 seq99159 107 2e-18 seq111813 102 7e-17 seq82767 102 7e-17 seq55416 102 7e-17 seq69221 96.9 3e-15 >seq109031 Length=8095 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||||||||||| || | ||||| | ||||||||| || Sbjct 77 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACGATCACGCTGGAAGTGGAGAGCTCG 136 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || || ||||| || || || ||||| ||||| Sbjct 137 GACACGATCGATAATGTGAAGGCTAAGATACAGGACAAGGAGGGAATCCCACCGGACCAG 196 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | ||||||||||||||||| ||||||||| | | ||| ||| || ||||| Sbjct 197 CAGAGGCTGATTTTTGCCGGCAAACAGCTAGAAGATGGTAGGACTTTGGCGGACTACAAC 256 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||| || || || | ||| | ||||| ||||| | || |||| Sbjct 257 ATTCAAAAGGAGTCGACTTTGCATCTGGTGCTTAGGCTGCGTGGTGGAA 305 >seq117762 Length=309 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||| || ||||||| | ||||| ||| || Sbjct 254 ATGCAAATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTTGAAGTCGAGAGCTCG 195 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || ||||| || ||||| Sbjct 194 GACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 135 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | || |||| ||||| ||| |||||||| Sbjct 134 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGACGCACCTTGGCTGATTACAAC 75 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || |||||||| || ||||| || || Sbjct 74 ATCCAGAAGGAATCCACCCTCCATTTGGTCCT 43 >seq99159 Length=5808 Score = 107 bits (118), Expect = 2e-18 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| || || || || | ||||| ||||||||||| || Sbjct 2261 ATGCAAATCTTTGTTAAGACCTTAACGGGCAAGACAATCACGCTCGAAGTGGAGAGTTCC 2202 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| ||||| || || | || || | ||| ||||| || || ||||| || ||| Sbjct 2201 GACACCATCGA--CAATGTTAAGGCCAAGATTCA-GGACAAGGAGGGCATTCCCCCAGAC 2145 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || ||||| || || || | ||||||| |||||| | | |||||| Sbjct 2144 CAGCAGAGATTGATCTTTGCTGGAAAGCAGCTCGAAGATGGCCGCACTCTTGCTGATTAC 2085 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || ||||| ||||| || || || || Sbjct 2084 AACATTCAGAAAGAGTCTACTCTCCA 2059 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | || || ||| |||| || | || || ||| || Sbjct 1806 AATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATAACCCTGGAGGTTGAGAGTTC 1747 Query 25058 TGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || |||| || || | ||| ||||| |||||||| || || |||| Sbjct 1746 GGACACAATTGATAATGTGAAAGCTAAGATTCAA-GACAAGGAAGGGATACCCCCGGACC 1688 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | |||||||| ||||| || | || |||| |||||| | | || |||| Sbjct 1687 AGCAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGACGCACTCTAGCGGACTACA 1628 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||| || || || || || ||| | ||| | || | ||||||| Sbjct 1627 ATATTCAGAAGGAGTCGACTCTTCATCTGGTGTTGCGGTTGCGAGGAGG 1579 >seq111813 Length=4153 Score = 102 bits (112), Expect = 7e-17 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || | ||||||||||| || || ||||||| | || |||||| || Sbjct 1328 AATGCAGATTTTCATCAAGACTTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGCTC 1269 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || || || |||| || | ||| ||||| ||||| ||||| || || Sbjct 1268 CGACACAATTGA--CAATGTGAAAGCCAAGATTCA-GGACAAGGAAGGCATTCCTCCGGA 1212 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| |||||| | || ||||| || || || | ||||||| | || | | ||| || Sbjct 1211 CCAGCAGCGGCTGATATTTGCGGGTAAGCAGCTCGAAGATGGCTGGACGCTAGCCGACTA 1152 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||| || || || || || || || ||| | ||||| | | |||||||| Sbjct 1151 CAACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGTTTGAGAGGAGG 1101 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || || | ||||| |||| || ||| || Sbjct 1990 ATGCAAATCTTTGTTAAGACACTTACTGGAAAGACAATCACCCTCGAGGTTGAGAGCTCC 1931 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| | || || | ||| ||||| ||||| ||||| ||||| Sbjct 1930 GACACCATTGACAACGTCA---AGGCTAAGATTCAA-GACAAGGAAGGAATTCCTCCTGA 1875 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || || || || || || | || |||| | || | | ||||| Sbjct 1874 CCAGCAGAGGTTGATCTTCGCTGGAAAGCAGCTCGATGATGGCAGAACCCTTGCGGATTA 1815 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| |||||||||||||| || ||| | || || Sbjct 1814 CAATATCCAAAAAGAATCCACTCTCCATCTTGTCCT 1779 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/214 (69%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || ||| | | || || | || || | ||||| || || Sbjct 1557 AATGCAGATTTTCGTGAAAACTCTTGCTGGCAAGACGATAACCCTTGAAGTTGAAAGCTC 1498 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | ||| |||||| || ||||||||||| || || || || Sbjct 1497 AGACACTATCGACAACGTCAAGGCCAAAATCTAAGATAAAGAAGGGATCCCCCCCGAGCA 1438 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGC-GATTACA 25176 || || || | ||||| || || ||| | ||||||| | || | ||| ||||||| Sbjct 1437 GCAACGATTTTTCTTTGCTGGGAAGCAACTGGAAGATGGCAGAACACTAGGCAGATTACA 1378 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||| |||||||| || ||| | ||||| Sbjct 1377 GCATTCAAAAGGAATCCACCCTTCATCTCGTGCT 1344 >seq82767 Length=6942 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||||||||| || || |||||||| ||| || | || ||||| || ||||| || ||| Sbjct 3982 GACAAAGAAGGCATACCTCCTGACCAGCAGAGGCTAATATTTGCTGGTAAACAGTTGGAA 3923 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| | | || ||| ||||||||||| || |||||||| || || || | || || Sbjct 3922 GATGGTAGAACCTTGGCAGATTACAATATCCAGAAAGAATCAACACTTCACCTTGTTTTA 3863 Query 25212 AGGCTAAGAGGAGG 25225 || || |||||||| Sbjct 3862 AGACTTAGAGGAGG 3849 >seq55416 Length=9261 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||||||||| || || ||||| || ||| || | || |||||||| |||||||| ||| Sbjct 4043 GACAAAGAAGGCATACCTCCTGATCAGCAGAGGCTAATATTTGCCGGTAAACAATTGGAA 3984 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| | | || ||| ||||||||||| || |||||||| || || || | || || Sbjct 3983 GATGGTAGAACCTTGGCAGATTACAATATCCAGAAAGAATCAACACTTCACCTTGTTTTA 3924 Query 25212 AGGCTAAGAGGAGG 25225 || || || ||||| Sbjct 3923 AGACTTAGGGGAGG 3910 >seq69221 Length=10640 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 || |||||||| || || |||||||| ||| || |||| ||||| || |||||| | ||| Sbjct 5878 GATAAAGAAGGTATCCCCCCTGACCAGCAGAGGCTTATATTTGCTGGTAAACAACTGGAA 5937 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| | | ||| ||| || || || || ||||||||||| || || || | || | Sbjct 5938 GATGGTAGAACTTTGGCAGACTATAACATCCAAAAAGAATCAACACTTCACCTTGTTTTG 5997 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| || ||||||| Sbjct 5998 AGGCTTAGGGGAGGAA 6013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432683732398295