Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq115592 172 6e-38 seq85463 161 1e-34 seq31467 136 4e-27 seq110764 116 4e-21 seq71831 98.7 1e-15 >seq115592 Length=218 Score = 172 bits (190), Expect = 6e-38 Identities = 167/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 167856 GAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGA 167915 ||||||||||| | | || | ||| ||||| | || || ||||||| ||| ||||| | Sbjct 218 GAGTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAA 159 Query 167916 ATACTCTGTATGAAGATGGTGAGCAAGCAAACACTTTCAAAGCATTTGATACGACTCAGG 167975 ||||| | | |||||||||||| ||||| || ||| || ||| | | ||||| | Sbjct 158 ATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAG 99 Query 167976 AAGAGGAAACTTATTCCATGGTCACTGCTAACCGATTCTGGTCTCAAATTTTTGGTATTG 168035 || ||||||||||||||||||||||||||||| || ||||| ||||| ||||| ||| Sbjct 98 CCGAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTG 39 Query 168036 CTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATG 168070 |||| |||||| |||||||| || ||||||||| Sbjct 38 CTTTTTCCAATAAACGTTGGTTACATTTCTTTATG 4 >seq85463 Length=6098 Score = 161 bits (178), Expect = 1e-34 Identities = 208/288 (72%), Gaps = 18/288 (6%) Strand=Plus/Plus Query 166758 TCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCT 166817 |||||||||||| || || ||||||||||||| ||| ||| |||||||||| ||| | Sbjct 4019 TCATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTT 4078 Query 166818 GCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAG 166877 |||||| |||| || || |||||||| || ||||| ||||| |||| || ||| | || Sbjct 4079 ACACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAG 4136 Query 166878 CACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGG 166937 | |||||| ||||| || || |||||||| || ||| | ||| | | ||| |||| | Sbjct 4137 CGTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAG 4196 Query 166938 TCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAAT 166997 || || | |||| ||| || ||||||||||| || ||||| ||||| || Sbjct 4197 TC-------AAAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTAT 4249 Query 166998 GCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTTGCTGCTGCTGA 167045 || ||||||| || | | |||| || || ||||||| ||| Sbjct 4250 GC---------ATGCTCATAAATGCTCTCTAGACCTAGCTGCTGTTGA 4288 >seq31467 Length=18065 Score = 136 bits (150), Expect = 4e-27 Identities = 176/239 (74%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 166602 GCTG-GGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCG 166660 |||| || ||||| ||||||||||| || || || ||| || ||||| || | | Sbjct 5483 GCTGCGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGG 5424 Query 166661 TTACTTCCTCGCTCG-TCCGTGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAG 166719 | ||||| | | | | || | || ||||| |||| ||| ||| || | ||||||| Sbjct 5423 TAACTTC-TAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGA 5365 Query 166720 TTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTG 166779 | |||||||| ||||| || || || ||||| || |||||||||||||| | || || Sbjct 5364 TCCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTG 5305 Query 166780 ATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATG 166838 ||||||||||| ||| |||||||||||||| ||| | |||||||| || || || || Sbjct 5304 ATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq110764 Length=2751 Score = 116 bits (128), Expect = 4e-21 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 166810 CGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTT 166869 || ||| | ||||||||||| || || |||||||| || ||||||||||| |||||| | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 166870 GGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 166916 ||| | | ||||||||| |||||||| ||||||||||| |||||||| Sbjct 1600 GGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 >seq71831 Length=3823 Score = 98.7 bits (108), Expect = 1e-15 Identities = 210/310 (68%), Gaps = 3/310 (1%) Strand=Plus/Minus Query 166474 GTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATC 166533 || ||| || | || || | |||||||| ||| | ||| | ||||| || || || Sbjct 977 GTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTTTGATGGTATGCCTCTAGGAATT 918 Query 166534 AGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCC 166593 | | || ||||||| |||| |||| || | || ||||||| ||| || ||| |||| Sbjct 917 TCTTGTACTTTCAACTTCATGATTGTATTTTAGGCTGAGCACA-CATTCTTATGTACCCA 859 Query 166594 TTCCATATGCTGGGTGTAGCAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGC 166653 || |||||| | | ||||| |||||| || || || || ||| | ||||| || Sbjct 858 TTTCATATGTTAAGCGTAGCTAGTGTATACGACGGCTCCCTATTCAGTGTTATGCATGGT 799 Query 166654 AGTCTCGTTACTTCCTCGCTCG-TCCGTGAGACCACTGAAACTGAGTCTCAAAACTATGG 166712 | | ||||| | | | | || | | ||||| |||| ||| ||| || | || Sbjct 798 TCCTTGGCAACTTC-TAGTTTGATCAGGTAAACCACAGAAAATGAATCTGCTAATGAAGG 740 Query 166713 TTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTGGCTGCTCATGGTTACTTCGG 166772 |||| ||| ||||||| |||| || || || |||| | |||||||||||||| || Sbjct 739 ATACAGATTTAGTCAAGAGAAAGAAACTTATAATATCGCATCCGCTCATGGTTACTTTGG 680 Query 166773 TCGCCTGATC 166782 || ||||| Sbjct 679 CCGATTGATC 670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566367020832800