Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq81195 89.7 6e-13 seq70920 89.7 6e-13 seq20576 89.7 6e-13 seq72014 87.8 2e-12 seq52914 87.8 2e-12 seq102902 84.2 2e-11 seq85051 84.2 2e-11 seq101175 82.4 8e-11 seq83791 82.4 8e-11 seq83637 82.4 8e-11 seq63583 82.4 8e-11 seq56335 82.4 8e-11 seq16541 82.4 8e-11 >seq81195 Length=3973 Score = 89.7 bits (98), Expect = 6e-13 Identities = 77/94 (82%), Gaps = 6/94 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 1708 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGG 1651 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||||| || ||||| |||||||||| || Sbjct 1650 GCGTGGGTTCAAATCCCACTTCTGACAAATTTTT 1617 >seq70920 Length=8008 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/91 (82%), Gaps = 6/91 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 3659 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 3716 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| ||||||| || Sbjct 3717 GCGTGGGTTCAAATCCCACTTCTGACAATTT 3747 >seq20576 Length=7303 Score = 89.7 bits (98), Expect = 6e-13 Identities = 74/89 (83%), Gaps = 6/89 (7%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 1727 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 1670 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||| || ||||| |||||||| Sbjct 1669 GCGTGGGTTCAAATCCCACTTCTGACAAA 1641 >seq72014 Length=6816 Score = 87.8 bits (96), Expect = 2e-12 Identities = 76/93 (82%), Gaps = 6/93 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 6224 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 6281 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATT 126354 ||||||||| || ||||| ||||||| || || Sbjct 6282 CGTGGGTTCAAATCCCACTTCTGACAATTTTTT 6314 >seq52914 Length=1836 Score = 87.8 bits (96), Expect = 2e-12 Identities = 76/93 (82%), Gaps = 6/93 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || Sbjct 1019 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGG 962 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTAT 126353 |||||||||| || ||||| |||||| |||| Sbjct 961 GCGTGGGTTCAAATCCCACTTCTGACAGTTTAT 929 >seq102902 Length=8040 Score = 84.2 bits (92), Expect = 2e-11 Identities = 71/86 (83%), Gaps = 6/86 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 2636 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 2693 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 2694 CGTGGGTTCAAATCCCACTTCTGACA 2719 >seq85051 Length=5077 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 1373 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 1316 Query 126325 GGGTTCGAACCCCACACCTGACAAATTA 126352 |||||| || |||||| ||| |||| || Sbjct 1315 GGGTTCAAATCCCACAGCTGTCAAAATA 1288 >seq101175 Length=6347 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 4079 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 4136 Query 126328 TTCGAACCCCACACCTGACAAA 126349 ||| || |||||| ||| |||| Sbjct 4137 TTCAAATCCCACAGCTGTCAAA 4158 >seq83791 Length=6057 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 1354 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 1297 Query 126328 TTCGAACCCCACACCTGACAAA 126349 ||| || |||||| ||| |||| Sbjct 1296 TTCAAATCCCACAGCTGTCAAA 1275 >seq83637 Length=10020 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 835 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 894 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||| || ||||| ||||||| || Sbjct 895 GTGGGTTCAAATCCCACTTCTGACAATTT 923 >seq63583 Length=7411 Score = 82.4 bits (90), Expect = 8e-11 Identities = 73/90 (81%), Gaps = 6/90 (7%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 1728 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAGGG 1785 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||||| || ||||| ||||||| || Sbjct 1786 CGTGGGTTCAAATCCCACTTCTGACAATTT 1815 >seq56335 Length=3052 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCG 126323 ||| ||| |||||||||||||||||||||||||||||| | |||||| || | ||| Sbjct 2286 CAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCG 2343 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || |||||| ||| || Sbjct 2344 TGGGTTCAAATCCCACAGCTGTCA 2367 >seq16541 Length=10258 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 5732 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 5675 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| ||| ||| || Sbjct 5674 GGGTTCAAATCCCACAGCTGTCAATTT 5648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556011636005320