Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq117762 120 3e-22 seq99159 116 3e-21 seq70367 114 1e-20 seq109031 109 5e-19 seq95628 105 6e-18 seq111813 102 7e-17 seq4809 86.0 5e-12 >seq117762 Length=309 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || ||||||||||||| || | | | Sbjct 254 ATGCAAATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTTGAAGTCGAGAGCTCG 195 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || || ||||||||||| ||||| || || || Sbjct 194 GACACGATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 135 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||||||||| ||| | |||||| |||||| | | ||||||||| Sbjct 134 CAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGACGCACCTTGGCTGATTACAAC 75 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || || ||||||||| | ||||| || Sbjct 74 ATCCAGAAGGAATCCACCCTCCATTTGGT 46 >seq99159 Length=5808 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||||||| ||||| || || || | |||||||| || || | | || Sbjct 2033 ATGCAAATCTTTGTTAAAACCTTAACTGGAAAGACCATTACTCTTGAGGTTGAGAGCTCC 1974 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || || ||||| |||||||| ||||| || ||||| Sbjct 1973 GATACCATAGACAATGTCAAGGCCAAGATCCAAGATAAGGAGGGCATTCCTCCAGATCAG 1914 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || ||||| ||| | || ||| || || | |||| |||||| Sbjct 1913 CAGAGGTTGATTTTCGCTGGCAAGCAGCTCGATGATGGACGAACACTTGCCGACTACAAC 1854 Query 22399 ATTCAAAAAGAA 22410 || ||||| ||| Sbjct 1853 ATCCAAAAGGAA 1842 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||| || ||||| || || || |||| || |||||||| | || Sbjct 2261 ATGCAAATCTTTGTTAAGACCTTAACGGGCAAGACAATCACGCTCGAAGTGGAGAGTTCC 2202 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || | || || ||||| ||||||||||| ||||| || || || Sbjct 2201 GACACCATCGACAATGTTAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAG 2142 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || ||| | || ||| |||||| | | ||||||||| Sbjct 2141 CAGAGATTGATCTTTGCTGGAAAGCAGCTCGAAGATGGCCGCACTCTTGCTGATTACAAC 2082 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| ||||| || || Sbjct 2081 ATTCAGAAAGAGTCTAC 2065 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || || | || || || ||| |||| | || ||||| | | Sbjct 1578 GATGCAGATATTTGTGAAGACGCTGACTGGGAAGACGATCACATTGGAGGTGGAGAGTTC 1519 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | ||| || | || || || || || ||||||||||| ||||| || || Sbjct 1518 GGACACAATCGACAATGTGAAGGCGAAGATACAGGATAAGGAGGGTATCCCACCGGACCA 1459 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| | || |||||||| || || ||||| || ||| | || | | |||||||| Sbjct 1458 ACAGAGGCTGATATTTGCTGGTAAGCAGTTGGAAGATGGAAGGACTCTTGCAGATTACAA 1399 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTT 22448 ||| || ||||| || ||| | || | || | || |||| || ||||| Sbjct 1398 CATCCAGAAAGAGTCGACCCTGCACCTTGTCCTCCGCCTGCGTGGTGGTTT 1348 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || ||||| | || || || || || | | Sbjct 1805 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATAACCCTGGAGGTTGAGAGTTCG 1746 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| || |||||||||||||| || || || || || || Sbjct 1745 GACACAATTGATAATGTGAAAGCTAAGATTCAAGACAAGGAAGGGATACCCCCGGACCAG 1686 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| ||||| ||| | |||||| ||||| | | || ||||| Sbjct 1685 CAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGACGCACTCTAGCGGACTACAAT 1626 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | ||| | || ||||| ||||| ||||| Sbjct 1625 ATTCAGAAGGAGTCGACTCTTCATCTGGTGTTGCGGTTGCGAGGAGG 1579 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || ||||| || |||| || || || | || |||||||| || | || Sbjct 2489 ATGCAGATCTTCGTTAAGACCCTAACTGGGAAGACAATTACCCTTGAAGTTGAGAGTTCC 2430 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || || || |||||||||||||| ||||| || ||||| Sbjct 2429 GACACCATCGACAACGTAAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCAG 2370 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || || || ||| | ||||| |||||| | | || |||||| Sbjct 2369 CAAAGGTTGATCTTCGCGGGAAAGCAGCTTGAGGACGGCCGCACTCTTGCGGACTACAAC 2310 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 2309 ATCCAGAAGGAGTCTAC 2293 >seq70367 Length=2979 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | ||||| ||||| |||| || || || |||| | || Sbjct 286 ATGCAGATTTTTGTGAAGACCCTTACCGGGAAAACCATCACCCTAGAGGTTGAAAGCTCC 345 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || ||||| |||||||||||||| ||||| ||||| Sbjct 346 GACACAATTGACAATGTAAAGGCCAAGATTCAGGACAAGGAGGGTATCCCACCGGATCAG 405 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || ||| | || ||| ||| ||| | | ||||||||| Sbjct 406 CAGAGGTTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCCGTACCTTGGCTGATTACAAC 465 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 466 ATCCAGAAGGAGTCCACC 483 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| ||||| || || | | || Sbjct 58 ATGCAGATCTTTGTCAAGACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGAGCTCC 117 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || |||||||| || |||||||| ||||| Sbjct 118 GACACTATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCGGATCAG 177 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| |||||||| || ||| | |||||| ||||||| | | || |||||| Sbjct 178 CAGAGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGCACCTTGGCGGACTACAAC 237 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| ||||| || ||| | || || || Sbjct 238 ATTCAGAAAGAGTCGACCTTGCACTTGGT 266 >seq109031 Length=8095 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || ||||| || ||||| ||||| || ||| |||| || |||||||| | | | Sbjct 76 GATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACGATCACGCTGGAAGTGGAGAGCTC 135 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || || | || || || || ||||||||||| || ||||| || || Sbjct 136 GGACACGATCGATAATGTGAAGGCTAAGATACAGGACAAGGAGGGAATCCCACCGGACCA 195 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | || || ||||||||||||||| |||| ||| | || | | || ||||| Sbjct 196 GCAGAGGCTGATTTTTGCCGGCAAACAGCTAGAAGATGGTAGGACTTTGGCGGACTACAA 255 Query 22398 CATTCAAAAAGAATCCAC 22415 ||||||||| || || || Sbjct 256 CATTCAAAAGGAGTCGAC 273 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || ||| ||||| | || ||||| | | | Sbjct 305 ATGCAGATCTTTGTGAAGACTCTGACGGGGAAGACGATCACTTTGGAGGTGGAGAGCTCG 364 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||| |||||||||||||| || ||||| || || || Sbjct 365 GACACCATTGATAATGTGAAGGCAAAGATTCAAGACAAGGAAGGCATTCCGCCGGACCAG 424 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || ||| | |||||| | ||| | | ||||| || Sbjct 425 CAGAGGTTAATCTTTGCTGGGAAGCAGCTCGAGGATGGAAGGACCCTTGCTGATTATAAT 484 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 485 ATTCAGAAGGAGTCGAC 501 >seq95628 Length=1400 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || | || || || || |||| | || ||||| | | | Sbjct 235 ATGCAGATTTTTGTCAAGACACTGACAGGGAAGACCATCACCTTGGAGGTGGAGAGCTCG 294 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| || |||| || ||||| |||||||||||||| ||||| || || Sbjct 295 GATACCATTGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGTATCCCACCGGACCAG 354 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || ||||| |||||| | ||| | | || |||||| Sbjct 355 CAGAGGTTGATCTTTGCTGGGAAGCAGTTGGAGGATGGAAGGACCCTTGCTGACTACAAC 414 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| |||||| Sbjct 415 ATCCAGAAAGAGTCCACC 432 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || || | ||||| || || |||| | || || |||| | | Sbjct 7 ATGCAAATCTTCGTCAAGACACTGACCGGGAAGACCATCACCTTGGAGGTTGAAAGCTCT 66 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| || | || || ||||| ||||||||||| ||||| || ||||| Sbjct 67 GACACGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGGATTCCCCCGGATCAG 126 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || |||||||| || ||| | |||||| || || | ||||||||||| Sbjct 127 CAGAGGTTAATCTTTGCCGGGAAGCAGCTCGAGGATGGTCGTACGTTGGCCGATTACAAC 186 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||| | || || || || | || | ||||| Sbjct 187 ATCCAGAAGGAGTCCACCCTGCACTTGGTGCTGAGGTTAAGAGGAGG 233 >seq111813 Length=4153 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 |||||||||| |||||||| || | || || || || |||| || || || || | | Sbjct 1992 AGATGCAAATCTTTGTTAAGACACTTACTGGAAAGACAATCACCCTCGAGGTTGAGAGCT 1933 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 |||| ||| | ||| | |||| || |||||||||||||| || ||||| || || | Sbjct 1932 CCGACACCATTGACAACGTCAAGGCTAAGATTCAAGACAAGGAAGGAATTCCTCCTGACC 1873 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | | || || || || || ||| | || ||| | | ||| | | ||||||| Sbjct 1872 AGCAGAGGTTGATCTTCGCTGGAAAGCAGCTCGATGATGGCAGAACCCTTGCGGATTACA 1813 Query 22397 ACATTCAAAAAGAATCCAC 22415 | || |||||||||||||| Sbjct 1812 ATATCCAAAAAGAATCCAC 1794 >seq4809 Length=1103 Score = 86.0 bits (94), Expect = 5e-12 Identities = 115/160 (72%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 22214 TAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAA 22273 || ||||||| || ||||| ||||| | |||||||| || |||| ||||| || || | Sbjct 171 TACAGATGCAGATCTTTGTGAAAACCCTCACCGGTAAGACCATCACCCTTGAGGTCGAGA 112 Query 22274 CCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCG 22333 | |||| ||| | ||| | |||| || || ||||||||||| || ||||| || | Sbjct 111 GCTCCGACACCATCGACAACGTCAAGGCTAAGATCCAAGACAAGGAAGGAATTCCCCCAG 52 Query 22334 ATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGA 22373 | || || | | || || ||||| || ||| | ||||| Sbjct 51 ACCAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTTGAGGA 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419103952738045