Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq99159 93.3 3e-14 >seq99159 Length=5808 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || ||||||||||| || || || | ||| ||| | Sbjct 2261 ATGCAAATCTTTGTTAAGACCTTAACGGGCAAGACAATCACGCTCGAAGTGGAGAGTTCC 2202 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| || ||| || || ||||| | || | |||| Sbjct 2201 GACACCATCGACAATGTTAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAG 2142 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| || || || |||||| ||| | || |||||||| Sbjct 2141 CAGAGATTGATCTTTGCTGGAAAGCAGCTCGAAGATGGCCGCACTCTTGCTGATTACAAC 2082 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 |||||||| || |||||||| || |||| Sbjct 2081 ATTCAGAAAGAGTCTACTCTCCACCTGGT 2053 Score = 89.7 bits (98), Expect = 4e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||||| | || ||||||||||| || || || ||| | ||| | || || | Sbjct 1690 ACCAGCAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGACGCACTCTAGCGGACT 1631 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||||| || ||||||||| |||| || || || |||||||| Sbjct 1630 ACAATATTCAGAAGGAGTCGACTCTTCATCTGGTGTTGCGGTTGCGAGGAGG 1579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357592343740522