Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq70367 100 2e-16 seq109031 91.5 1e-13 seq111813 89.7 4e-13 seq82767 84.2 2e-11 seq69221 82.4 6e-11 >seq70367 Length=2979 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || |||| || || || | || || ||||| ||||||||||| || Sbjct 287 ATACCACCACGGAGCCTCAGGACCAAGTGCAAGGTCGACTCTTTCTGAATGTTGTAGTCC 228 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| ||||| || || || || |||| || | ||| || ||||| Sbjct 227 GCCAAGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGATCCGGT 168 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||| ||||| ||||| || | | |||| ||||||| | ||| Sbjct 167 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATAGTGTCGGAGCTCTCG 108 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || || || || || ||||| |||||||| Sbjct 107 ACCTCAAGGGTGATGGTCTTCCCTGTAAGGGTCTTGACAAAGATCTGCAT 58 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || ||||||||||| || ||||| |||||| || || || ||| Sbjct 482 GTGGACTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCATCTTCCAGCTGCTTCCCA 423 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| || ||||| || || || || ||||| |||||| ||| Sbjct 422 GCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGAATCTTGGCCTTT 363 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | ||| || || | ||| | ||||| ||||| || || Sbjct 362 ACATTGTCAATTGTGTCGGAGCTTTCAACCTCTAGGGTGATGGTTTTCCCGGTAAGGGTC 303 Query 114366 TTTACAAAAATCTGCAT 114382 || |||||||||||||| Sbjct 302 TTCACAAAAATCTGCAT 286 >seq109031 Length=8095 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || || | || | ||| | || || || |||||||||||||| || Sbjct 306 ATTCCACCACGCAGCCTAAGCACCAGATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCC 247 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| | | |||||| || ||||| || || | || || | ||| |||||||| Sbjct 246 GCCAAAGTCCTACCATCTTCTAGCTGTTTGCCGGCAAAAATCAGCCTCTGCTGGTCCGGT 187 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| ||||| || | | || | ||||| | | || Sbjct 186 GGGATTCCCTCCTTGTCCTGTATCTTAGCCTTCACATTATCGATCGTGTCCGAGCTCTCC 127 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||| |||||||||| ||| || ||||| |||||||| Sbjct 126 ACTTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 77 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 ||| || || || || ||||| |||| | | ||| |||||||| ||||||||||| || Sbjct 460 ATCCTCGAGCTGCTTCCCAGCAAAGATTAACCTCTGCTGGTCCGGCGGAATGCCTTCCTT 401 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| ||||||| || | | |||| |||||| | | || || |||| || | Sbjct 400 GTCTTGAATCTTTGCCTTCACATTATCAATGGTGTCCGAGCTCTCCACCTCCAAAGTGAT 341 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || || |||||||| || ||||| |||||||| Sbjct 340 CGTCTTCCCCGTCAGAGTCTTCACAAAGATCTGCAT 305 >seq111813 Length=4153 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| | || | |||||| || || ||||| Sbjct 1131 GTCGACTCCTTCTGGATGTTGTAGTCGGCTAGCGTCCAGCCATCTTCGAGCTGCTTACCC 1190 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || || ||||| |||||||||||||||||||| ||||| |||||| ||| Sbjct 1191 GCAAATATCAGCCGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCCTGAATCTTGGCTTTC 1250 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| | || || |||| || | || || || |||| ||| Sbjct 1251 ACATTGTCAATTGTGTCGGAGCTCTCCACCTCCAAAGTGATGGTCTTTCCAGTCAAAGTC 1310 Query 114366 TTTACAAAAATCTGCAT 114382 || | ||||||||||| Sbjct 1311 TTGATGAAAATCTGCAT 1327 >seq82767 Length=6942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| || | ||||| ||||| | || | || |||||||| || || |||||||| Sbjct 3847 TACCTCCTCTAAGTCTTAAAACAAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCTG 3906 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 || || | | |||||| | ||||||||||| | || || | ||| ||||| |||| Sbjct 3907 CCAAGGTTCTACCATCTTCCAACTGTTTACCAGCAAATATTAGCCTCTGCTGGTCAGGAG 3966 Query 114274 GAATGCCTTCTTTGTC 114289 | |||||||||||||| Sbjct 3967 GTATGCCTTCTTTGTC 3982 >seq69221 Length=10640 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 || |||||||| | || | || ||||||||||| ||||| || || || ||| | | Sbjct 6002 AGCCTCAAAACAAGGTGAAGTGTTGATTCTTTTTGGATGTTATAGTCTGCCAAAGTTCTA 5943 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| |||||||||||||| | || || | ||| ||||| || || || |||||| Sbjct 5942 CCATCTTCCAGTTGTTTACCAGCAAATATAAGCCTCTGCTGGTCAGGGGGGATACCTTCT 5883 Query 114285 TTGTC 114289 || || Sbjct 5882 TTATC 5878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419509748506716