Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq111813 89.7 4e-13 seq95628 82.4 6e-11 >seq111813 Length=4153 Score = 89.7 bits (98), Expect = 4e-13 Identities = 109/145 (75%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||||| ||||||||||||||||| || ||||||||| |||||||| || | | Sbjct 1101 CCTCCTCTCAAACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTC-GGC 1159 Query 33961 AATTGTC--GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | ||| || | || || | ||||| || ||||||||||| |||||||| ||| | Sbjct 1160 TAGCGTCCAGC-CATCTTCGAGCTGCTTACCCGCAAATATCAGCCGCTGCTGGTCCGGAG 1218 Query 34019 GCACGCTCTCTTTGTCCATAATTTT 34043 | | || || |||||| ||| || Sbjct 1219 GAATGCCTTCCTTGTCCTGAATCTT 1243 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 33917 GCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCGTCGT 33976 ||||||| || || ||| ||||||||| ||||| |||||||||| ||| | || | Sbjct 916 GCACCAGGTGCAGAGTGTACTCCTTCTGTATGTTATAATCTGCCAGGGTGCGCCCATCCT 975 Query 33977 CCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 ||| ||||| |||||||| || || |||||||||||| Sbjct 976 CCAGCTGCTTCCCGGCAAAGATGAGCCGCTGCTGATCC 1013 >seq95628 Length=1400 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 |||||||| | || |||||||| || || ||| ||||||||| ||||||||||| ||| Sbjct 233 CCTCCTCTTAACCTCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 174 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || || | ||||| |||||||| || | | |||||||||| || Sbjct 173 AACGTACGACCATCCTCGAGCTGCTTCCCGGCAAAGATTAACCTCTGCTGATCCGGGGGA 114 Query 34021 ACGCTCTCTTTGTCCATAATTTT 34043 | | ||| |||||| ||| || Sbjct 113 ATCCCCTCCTTGTCCTGAATCTT 91 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396472051718386