Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq66988 150 4e-31 seq109031 125 2e-23 seq120438 114 3e-20 seq111813 107 5e-18 seq99159 107 5e-18 seq100836 102 2e-16 seq77523 100 7e-16 seq117762 98.7 2e-15 seq23260 95.1 3e-14 seq103400 89.7 1e-12 seq95628 87.8 4e-12 seq9177 87.8 4e-12 seq109834 84.2 5e-11 >seq66988 Length=1372 Score = 150 bits (166), Expect = 4e-31 Identities = 172/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | ||| |||||||||| || ||| || || ||||| || || || Sbjct 142 CCGCCACGGAGACGAAGAACGAGATGAAGAGTCGATTCCTTCTGAATATTGTAATCCGCA 201 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || ||||||||||| | || ||||| ||||||||||| ||||| ||| || Sbjct 202 AGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGATCGGGCGGA 261 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 |||||||| ||||| ||||| ||||| || ||||| || || | ||| ||| || Sbjct 262 ATTCCTTCCTTATCTTGGATCTTCGCCTTGACGTTGTCGATGGTATCAGAACTC---TCG 318 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||||||||| ||||| || || || ||||| |||||||| Sbjct 319 ACCTCGAGAGTGATCGTCTTTCCGGTTAGGGTTTTCACGAAGATCTGCAT 368 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/143 (73%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||||| |||||| ||| || || || ||||||||||| || || || Sbjct 1 CCGGCGAAGATCAAACGCTGCTGATCCGGCGGAATCCCCTCTTTATCCTGAATCTTTGCC 60 Query 288394 TTCACGTTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 || ||||| || || | || |||| || || ||||| ||||| |||||||| || Sbjct 61 TTGACGTTATCGATTGTGTCGGAGCTC---TCGACCTCGAGAGTGATTGTCTTCCCCGTT 117 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| |||||||| Sbjct 118 AGTGTTTTAACGAAGATCTGCAT 140 >seq109031 Length=8095 Score = 125 bits (138), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || ||||| || ||||| | || || ||||| || || ||||| || Sbjct 304 TCCACCACGCAGCCTAAGCACCAGATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGC 245 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 | || | || ||||||| ||||| || || || ||||| | ||| || ||| Sbjct 244 CAAAGTCCTACCATCTTCTAGCTGTTTGCCGGCAAAAATCAGCCTCTGCTGGTCCGGTGG 185 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTC 288422 |||||| || || ||||| || || || ||||| || || || | || |||| || Sbjct 184 GATTCCCTCCTTGTCCTGTATCTTAGCCTTCACATTATCGATCGTGTCCGAGCTC---TC 128 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| |||||||||||||| ||||||| ||||||||| || |||||||| Sbjct 127 CACTTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 77 >seq120438 Length=878 Score = 114 bits (126), Expect = 3e-20 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || || ||||| || ||||| || || | |||||||||||| || Sbjct 143 ATACCTTCCTTGTCTTGAATCTTCGCCTTAACGTTGTCGATTGTATCGCTCGATTCGACC 202 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||||||||| || ||||||||||| ||||||||||| ||||||||| Sbjct 203 TCGAGCGTGATGGTTTTCCCGGTCAGCGTCTTGACGAAGATCTGCATT 250 >seq111813 Length=4153 Score = 107 bits (118), Expect = 5e-18 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||| || | || || ||||| | ||| ||||||||||||||| || || || Sbjct 1763 TCCACCGCGAAGACAGAGGACAAGATGGAGAGTGGATTCTTTTTGGATATTGTAATCCGC 1822 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | || || || | || ||||| |||||||||| | ||| || | || Sbjct 1823 AAGGGTTCTGCCATCATCGAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCAGGAGG 1882 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTC 288422 |||||||| || || || || || || || ||||| || || | || |||| || Sbjct 1883 AATTCCTTCCTTGTCTTGAATCTTAGCCTTGACGTTGTCAATGGTGTCGGAGCTC---TC 1939 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| || || || ||||| || || || ||||| Sbjct 1940 AACCTCGAGGGTGATTGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCAT 1990 Score = 98.7 bits (108), Expect = 2e-15 Identities = 163/233 (70%), Gaps = 7/233 (3%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || |||||||||| ||| ||| ||||| || | || || || Sbjct 1328 TCCACCACGAAGACGCAGCACGAGATGAAGGGTGGATTCCTTTTGAATGCTGTAATCTGC 1387 Query 288306 G-AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTG 288364 || || | || ||||| | ||| || || || |||| | || || || | Sbjct 1388 CTAGTGTTCTGCCATCTTCCAGTTGCTTCCCAGCAAAGAAAAATCGTTGCTGCTCGGGGG 1447 Query 288365 GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATT 288421 |||| ||||||||||| | |||||| || || ||||| || |||| || ||| || Sbjct 1448 GGATCCCTTCTTTATCTTAGATTTTGGCCTTGACGTTGTCGATAGTGTCTGAGCT---TT 1504 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 | ||||| || || |||||||| || | ||||| || ||||| ||||||||| Sbjct 1505 CAACTTCAAGGGTTATCGTCTTGCCAGCAAGAGTTTTCACGAAAATCTGCATT 1557 >seq99159 Length=5808 Score = 107 bits (118), Expect = 5e-18 Identities = 141/194 (73%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || || || || || || | ||| ||||| || || || || || || Sbjct 1387 TCTTTCTGGATGTTGTAATCTGCAAGAGTCCTTCCATCTTCCAACTGCTTACCAGCAAAT 1446 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | |||||| |||||| || || |||||||| || ||||| ||||| || Sbjct 1447 ATCAGCCTCTGTTGGTCCGGTGGGATACCCTCCTTATCCTGTATCTTCGCCTTCACATTG 1506 Query 288403 TCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || ||| || || || | |||||||||||||| ||||| ||||| Sbjct 1507 TCGATTGTGTCCGAACTC---TCCACCTCCAATGTGATCGTCTTCCCAGTCAGCGTCTTC 1563 Query 288460 ACGAATATCTGCAT 288473 || ||||||||||| Sbjct 1564 ACAAATATCTGCAT 1577 Score = 102 bits (112), Expect = 2e-16 Identities = 164/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | ||| || | ||| | || || || || || || ||||| || Sbjct 2491 CCACCTCTGAGACGAAGGACCAAATGGAGGGTAGACTCCTTCTGTATGTTGTAGTCTGCA 2550 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 || ||||| || ||||| | |||||| || || ||||||| | |||| | | | Sbjct 2551 AGGGTGCGACCATCTTCGAGTTGTTTGCCCGCAAAGATCAACCTTTGCTGGTCCGGA--- 2607 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||||| ||||| || ||||||||||| || || ||||| || || | || ||| | Sbjct 2608 GGGATCCCTTCCTTGTCCTGGATTTTAGCCTTTACGTTATCGATTGTGTCTGAGCT---T 2664 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| ||||| ||||| || || || || || ||||| |||||||| Sbjct 2665 TCCACCTCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 2717 Score = 89.7 bits (98), Expect = 1e-12 Identities = 165/238 (69%), Gaps = 13/238 (5%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | ||| || || || | || ||||| || || || || | Sbjct 2031 CATG-CCACCACGGAGGCGAAGGACCAGGTGGAGAGTAGACTCTTTCTGAATGTTGTAAT 2089 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 | || || ||||| || ||||| | || ||||| || ||||||| | ||| || | Sbjct 2090 CAGCAAGAGTGCGGCCATCTTCGAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGG---T 2146 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---C 288415 ||||| || || || || ||||| || || || || || || || || | ||| | Sbjct 2147 CTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTAACATTGTCGATGGTGTCGGAAC 2206 Query 288416 TCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || |||||||||||||| ||||| || || | ||||| || || || ||||| Sbjct 2207 TC---TCCACTTCGAGCGTGATTGTCTTGCCCGTTAAGGTCTTAACAAAGATTTGCAT 2261 >seq100836 Length=1408 Score = 102 bits (112), Expect = 2e-16 Identities = 93/116 (80%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || |||||||| || || || || || | ||||||||||| || Sbjct 630 ATACCTTCCTTGTCTTGAATTTTCGCCTTAACATTGTCGATTGTGTCGCTCGATTCGACC 571 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCA-TTATGTTAT 288481 ||||||||||| || || |||||||| ||||| ||||| ||||||| || |||||| Sbjct 570 TCGAGCGTGATTGTTTTTCCGGTCAGCGTCTTCACGAAGATCTGCATTTTTGTTAT 515 >seq77523 Length=17999 Score = 100 bits (110), Expect = 7e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || || || || ||||| || || || || || | ||||||||||| || Sbjct 100 ATACCTTCCTTGTCTTGAATCTTCGCCTTAACATTGTCGATTGTGTCGCTCGATTCGACC 159 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||||||||| |||||||||||||| || || ||||| ||||||||| Sbjct 160 TCGAGCGTGATGGTCTTCCCGGTCAGCGTTTTCACGAAGATCTGCATT 207 >seq117762 Length=309 Score = 98.7 bits (108), Expect = 2e-15 Identities = 163/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | ||| | ||| ||| || ||||| || || || || Sbjct 28 CCACCACGGAGACGGAGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 87 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||||| || || | || || || || ||||||| | ||| || || ||| Sbjct 88 AAGGTGCGTCCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGG---TCCGGG 144 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 || || || || |||||||| || || || ||||| || || | || |||| Sbjct 145 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATCGTGTCCGAGCTC--- 201 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 202 TCGACTTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 254 >seq23260 Length=14596 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 |||||||| || |||||||| || || || || || |||| ||||||||||| || ||| Sbjct 10604 CCTTCTTTGTCTTGGATTTTGGCCTTGACATTGTCGATAGTGTCGCTCGATTCGACCTCG 10545 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| || || |||||||| || || || ||||| || |||||| Sbjct 10544 AGCGTTATTGTTTTCCCGGTTAGGGTTTTCACGAAGATTTGCATT 10500 >seq103400 Length=1682 Score = 89.7 bits (98), Expect = 1e-12 Identities = 105/141 (74%), Gaps = 6/141 (4%) Strand=Plus/Plus Query 288337 GCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 ||||||||||| ||||| || || |||||||| || ||||| |||||||| ||| Sbjct 1 GCGAAGATCAGCCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCCTGAATTTTCGCCTTC 60 Query 288397 ACGTTTTCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || | || || | ||| ||| || |||||||| |||||||| || ||||| || Sbjct 61 ACAATGTCGATTGTGTCGGAACTC---TCGACTTCGAGGGTGATCGTTTTGCCGGTTAGG 117 Query 288454 GTCTTGACGAATATCTGCATT 288474 || || ||||| ||||||||| Sbjct 118 GTTTTCACGAAGATCTGCATT 138 >seq95628 Length=1400 Score = 87.8 bits (96), Expect = 4e-12 Identities = 139/197 (71%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || ||||| | ||| || || || || | || || || || ||| Sbjct 197 TCCTTCTGGATGTTGTAATCGGCCAACGTACGACCATCCTCGAGCTGCTTCCCGGCAAAG 138 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || | | ||| ||| || ||| || || || || ||||| || ||||| ||||| Sbjct 137 ATTAACCTCTGCTGA---TCCGGGGGAATCCCCTCCTTGTCCTGAATCTTCGCCTTCACA 81 Query 288400 TTTTCTATAGAATC---GCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 || || || | || ||| ||| || || | ||||| |||||||||||||| ||| Sbjct 80 TTGTCGATCGTGTCAGAGCT---TTCAACCTCCAAGGTGATGGTCTTCCCGGTCAGTGTC 24 Query 288457 TTGACGAATATCTGCAT 288473 |||||||| || ||||| Sbjct 23 TTGACGAAGATTTGCAT 7 >seq9177 Length=5018 Score = 87.8 bits (96), Expect = 4e-12 Identities = 88/113 (78%), Gaps = 6/113 (5%) Strand=Plus/Minus Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGAT 288420 ||||||||||| || || ||||| ||||| || ||||| || || | |||| ||| Sbjct 5004 GGGATTCCTTCCTTGTCTTGGATCTTCGCCTTGACGTTGTCGATGGTATCGGAACTC--- 4948 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || |||||||| ||||| || || |||||||| |||||||| Sbjct 4947 TCGACCTCGAGAGTAATCGTCTTTCCGGTTAGGGTTTTGACGAAGATCTGCAT 4895 >seq109834 Length=6695 Score = 84.2 bits (92), Expect = 5e-11 Identities = 116/161 (72%), Gaps = 6/161 (4%) Strand=Plus/Plus Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375 ||||| || | || || || ||||||||||| | ||| || || ||||| || Sbjct 2 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGAATTCCCTCC 61 Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCTACTTCGAGC 288432 || |||||||| || || || ||||| ||||| | || |||| || || ||||| Sbjct 62 TTGTCCTGGATCTTAGCCTTGACGTTATCTATGGTGTCCGAGCTC---TCCACCTCGAGG 118 Query 288433 GTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || || || ||||| |||||||| Sbjct 119 GTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177810558516254