Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq109031 134 1e-26 seq66988 132 5e-26 seq111813 127 2e-24 seq117762 107 2e-18 seq109030 102 8e-17 seq99159 100 3e-16 seq70367 96.9 3e-15 seq95628 87.8 2e-12 seq109834 86.0 6e-12 seq82767 84.2 2e-11 seq50538 84.2 2e-11 >seq109031 Length=8095 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || |||| |||||||| ||||| | ||||| || |||||||||||||| || || Sbjct 303 CCACCACGCAGCCTAAGCACCAGATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGCC 244 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | | ||||| ||||| ||||||||| |||| |||| ||||||||| || || Sbjct 243 AAAGTCCTACCATCTTCTAGCTGTTTGCCGGCAAAAATCAGCCTCTGCTGGTCCGGTGGG 184 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| || || || ||||| || ||| ||| || | || || | |||||| Sbjct 183 ATTCCCTCCTTGTCCTGTATCTTAGCCTTCACATTATCGATCGTGTCCGAGCTCTCCACT 124 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||||||||||| || || || || ||||| Sbjct 123 TCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 77 >seq66988 Length=1372 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| || | | ||| || ||||||| |||||||| || ||||| |||||||| || Sbjct 141 ACCGCCACGGAGACGAAGAACGAGATGAAGAGTCGATTCCTTCTGAATATTGTAATCCGC 200 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || ||||||| |||||||| ||||| | || || |||||||| ||||| || Sbjct 201 AAGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGATCGGGCGG 260 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||||||| || ||||| || || ||| || || | |||||| || || Sbjct 261 AATTCCTTCCTTATCTTGGATCTTCGCCTTGACGTTGTCGATGGTATCAGAACTCTCGAC 320 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | ||||| ||||| | ||||| ||||| || ||||| || Sbjct 321 CTCGAGAGTGATCGTCTTTCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 371 >seq111813 Length=4153 Score = 127 bits (140), Expect = 2e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||||| ||||| || || || |||||||| || || | || | | ||| Sbjct 1116 AGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGCGTCCAGCCATCT 1175 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | || |||||||||||||| |||||||| ||||| || || Sbjct 1176 TCGAGCTGCTTACCCGCAAATATCAGCCGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCC 1235 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| || | ||| || | ||||| || | ||| | ||| Sbjct 1236 TG-AATCTTGGCTTTCACATTGTCAATTGTGTCGGAGCTCTCCACCTCCAAAGTGATGGT 1294 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| || |||||||| || | |||||| |||||| Sbjct 1295 CTTTCCAGTCAAAGTCTTGATGAAAATCTGCATT 1328 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 64253 TCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAA 64312 || || || ||||| |||||||| | ||||||| | || || |||||||| |||||| | Sbjct 936 TCCTTCTGTATGTTATAATCTGCCAGGGTGCGCCCATCCTCCAGCTGCTTCCCGGCAAAG 995 Query 64313 ATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 |||||||||||||| || || || || ||||| || ||||| || || Sbjct 996 ATGAGCCGCTGCTGATCCGGTGGTATCCCTTCCTTATCTTGAATCTT 1042 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || ||||||||||| || |||||||| || | ||| | | || Sbjct 1779 AGGACAAGATGGAGAGTGGATTCTTTTTGGATATTGTAATCCGCAAGGGTTCTGCCATCA 1838 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || || | || | || ||||||||| |||||||||||||| || ||| Sbjct 1839 TCGAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTGTCT 1898 Query 64352 TGTATTTT 64359 || || || Sbjct 1899 TGAATCTT 1906 >seq117762 Length=309 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || ||||||||||| || | |||||| | || || |||||||||||| Sbjct 58 GTGGATTCCTTCTGGATGTTGTAATCAGCCAAGGTGCGTCCATCCTCGAGCTGCTTGCCG 117 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || | || ||||||||| || ||||| || || || || || || || ||| Sbjct 118 GCAAAGATCAACCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 177 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || || | || ||||| | ||| | |||||||||||| | || Sbjct 178 ACGTTGTCAATCGTGTCCGAGCTCTCGACTTCAAGAGTGATGGTCTTGCCGGTAAGGGTC 237 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 238 TTGACGAAGATTTGCAT 254 >seq109030 Length=217 Score = 102 bits (112), Expect = 8e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||| | | ||| || ||||| | |||||||| ||||| || ||||||||||| Sbjct 132 CCTCCGCGGAGGCGAAGAACGAGATGGAGAGTCGATTCCTTTTGGATATTGTAATCTGCT 73 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||| | ||||||| |||||||| || ||| | || || |||||||| || || ||| Sbjct 72 AGGGTTCTGCCGTCTTCGAGCTGCTTCCCAGCAAAGATTAGGCGCTGCTGATCCGGTGGA 13 Query 64337 ATTCCTTCTTT 64347 |||||||| || Sbjct 12 ATTCCTTCCTT 2 >seq99159 Length=5808 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| | | ||| ||||||| ||||| || || ||||| ||||| || || Sbjct 1579 CCTCCTCGCAACCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCCGCT 1638 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||||||||| ||| |||| | || ||||||||| || || Sbjct 1639 AGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGT 1698 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || ||||| | | || ||||| ||| || | ||| || || || Sbjct 1699 ATCCCTTCCTTGTCTTG-AATCTTAGCTTTCACATTATCAATTGTGTCCGAACTCTCAAC 1757 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | |||| ||| ||||| || | || || || || || |||||| Sbjct 1758 CTCCAGGGTTATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATT 1806 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 64252 TTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATA 64311 ||| ||||| |||||||| || || | || || | || || ||||||||||| || | Sbjct 1842 TTCCTTTTGGATGTTGTAGTCGGCAAGTGTTCGTCCATCATCGAGCTGCTTGCCAGCGAA 1901 Query 64312 AATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAAC 64371 ||| | || |||||| || |||||||| || || || ||||| || || ||| ||| Sbjct 1902 AATCAACCTCTGCTGATCTGGAGGAATGCCCTCCTTATCTTGGATCTTGGCCTTGACATT 1961 Query 64372 CTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTAC 64431 || | ||||| | || || || | ||| | |||||| || || || ||||| || Sbjct 1962 GTCTATGGTATCGGAGCTCTCAACCTCAAGAGTAATGGTCTTTCCAGTTAAGGTTTTAAC 2021 Query 64432 GAAAATTTGCAT 64443 || |||||||| Sbjct 2022 AAAGATTTGCAT 2033 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | || || ||||| |||||||||||||| || | ||||| | || Sbjct 2049 AAGGACCAGGTGGAGAGTAGACTCTTTCTGAATGTTGTAATCAGCAAGAGTGCGGCCATC 2108 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||| |||||||| || ||| | || | | ||||||||| || ||||| || || || || Sbjct 2109 TTCGAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTC 2168 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| || | || || |||||||| | || | || Sbjct 2169 CTGAATCTTGGCCTTAACATTGTCGATGGTGTCGGAACTCTCCACTTCGAGCGTGATTGT 2228 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || || || || || || |||||||| Sbjct 2229 CTTGCCCGTTAAGGTCTTAACAAAGATTTGCAT 2261 >seq70367 Length=2979 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| ||||| ||||||||||| || || | |||||| | || ||||||||||| ||| Sbjct 254 GTCGACTCTTTCTGAATGTTGTAGTCCGCCAAGGTGCGGCCATCCTCAAGCTGCTTTCCG 195 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| | || |||| |||||| || || ||||| ||||| || || || || || Sbjct 194 GCAAAGATAAGCCTCTGCTGATCCGGTGGAATGCCTTCCTTGTCCTGGATCTT 142 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || || ||||||||||| || | ||| || | ||| Sbjct 497 AGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCATCT 438 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || ||| | || | || |||||| || || || || || || || || Sbjct 437 TCCAGCTGCTTCCCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTGTCC 378 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||||||| || | ||| || | || || |||| || | ||| Sbjct 377 TGAATCTTGGCCTTTACATTGTCAATTGTGTCGGAGCTTTCAACCTCTAGGGTGATGGTT 318 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || ||||| | || || || ||||| ||||| Sbjct 317 TTCCCGGTAAGGGTCTTCACAAAAATCTGCAT 286 >seq95628 Length=1400 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 || || ||||| | || | || || || || || ||||||||||| || | || || Sbjct 224 AACCTCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGCCAACGTACGA 165 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | || || |||||||| |||||| | || | || |||||| || || ||||| || || Sbjct 164 CCATCCTCGAGCTGCTTCCCGGCAAAGATTAACCTCTGCTGATCCGGGGGAATCCCCTCC 105 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTT 64405 || || || || || ||| ||| || | || ||| | || || || | || Sbjct 104 TTGTCCTGAATCTTCGCCTTCACATTGTCGATCGTGTCAGAGCTTTCAACCTCCAAGGTG 45 Query 64406 ACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | |||||| ||||||| || || ||||| |||||||| Sbjct 44 ATGGTCTTCCCGGTCAGTGTCTTGACGAAGATTTGCAT 7 >seq109834 Length=6695 Score = 86.0 bits (94), Expect = 6e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 64287 CGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTT 64346 |||| || |||||||||||||| | || |||| ||||||||| ||||||||||| || | Sbjct 3 CGTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGAATTCCCTCCT 62 Query 64347 TTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTA 64406 | || || || || ||| || || | || || | ||||| || | || | Sbjct 63 TGTCCTGGATCTTAGCCTTGACGTTATCTATGGTGTCCGAGCTCTCCACCTCGAGGGTGA 122 Query 64407 CGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||||||| | ||||| ||||| || ||||| Sbjct 123 TGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 159 >seq82767 Length=6942 Score = 84.2 bits (92), Expect = 2e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 64235 ACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCA 64294 || || |||| || |||||||| || || ||||||||||| | ||| | | ||||| Sbjct 3867 ACAAGGTGAAGTGTTGATTCTTTCTGGATATTGTAATCTGCCAAGGTTCTACCATCTTCC 3926 Query 64295 AGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 | ||| || || ||| | || |||| ||||||||| ||||| || |||||||| || || Sbjct 3927 AACTGTTTACCAGCAAATATTAGCCTCTGCTGGTCAGGAGGTATGCCTTCTTTGTCCTG 3985 >seq50538 Length=3911 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 64254 CTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAA 64313 |||| |||||||| ||||| || | || ||| | |||||||||||||| ||||| ||| Sbjct 3049 CTTTCTGAATGTTATAATCGGCAAGAGTTCGCCCATCTTCAAGCTGCTTTCCGGCGAAAA 3108 Query 64314 TGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 | || ||||| ||||| ||||| |||||| Sbjct 3109 TCAGACGCTGTTGGTCCGGAGGGATTCCT 3137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498882885398920