Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq70367 93.3 3e-14 seq111813 86.0 4e-12 seq99159 84.2 2e-11 >seq70367 Length=2979 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCTGAGAATTCTCGCGTCTTCTAATTG 15032 |||||||| || || || || ||||||||||| || || | | | ||||| | || Sbjct 488 TGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCCAAG-GTACGGCCATCTTCCAGCTG 430 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 || ||||| | ||||| | ||| || || ||| || || |||||||| ||| || Sbjct 429 CTTCCCAGCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGAATCTT 370 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | |||||| | || || || ||| |||| || |||| ||| |||||||| || || Sbjct 369 GGCCTTTACATTGTCAATTGTGTCGGAGCTTTCAACCTCTAGGGTGATGGTTTTCCCGGT 310 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || || || |||||||| |||||| Sbjct 309 AAGGGTCTTCACAAAAATCTGCATA 285 >seq111813 Length=4153 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||| | | || | ||||||||| || || || || |||||||| ||| Sbjct 1101 CCTCCTCTCAAACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCT 1160 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| | || || || || |||||| ||||| ||||| ||| Sbjct 1161 AGCGTCCAGCCATCTTCGAGCTGCTTACCCGCAAATATCAGCCGCTGCTGGTCCGGAGGA 1220 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||| ||| ||| ||| | || || || ||| | || || Sbjct 1221 ATGCCTTCCTTGTCCTGAATCTTGGCTTTCACATTGTCAATTGTGTCGGAGCTCTCCACC 1280 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || || |||| ||| || | ||||| ||||| Sbjct 1281 TCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGATGAAAATCTGCAT 1327 >seq99159 Length=5808 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 || |||||||| | || || | |||||| || || || || || || ||||| || ||| Sbjct 1579 CCTCCTCGCAACCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCCGCT 1638 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 ||| | | | || || | || |||||||| | ||||| | ||| ||||| || Sbjct 1639 -AGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGG 1697 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| ||| || ||| ||| | || || || || | | || || Sbjct 1698 TATCCCTTCCTTGTCTTGAATCTTAGCTTTCACATTATCAATTGTGTCCGAACTCTCAAC 1757 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| |||||||| || || || || || ||||| || ||||| Sbjct 1758 CTCCAGGGTTATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356860633260005