Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq99159 132 5e-26 seq66988 125 7e-24 seq109031 123 2e-23 seq117762 120 3e-22 seq95628 113 4e-20 seq111813 109 5e-19 seq109834 104 2e-17 seq103400 104 2e-17 seq70367 104 2e-17 >seq99159 Length=5808 Score = 132 bits (146), Expect = 5e-26 Identities = 148/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 ||||||||||| ||||| |||||||| | | ||||| ||| || ||||| |||||| Sbjct 2065 GTAGACTCTTTCTGAATGTTGTAATCAGCAAGAGTGCGGCCATCTTCGAGCTGCTTTCCA 2124 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||||| |||||| || || || ||||||||||||||| || || ||| Sbjct 2125 GCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTTA 2184 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||| | |||||| ||||||| || | || ||||| || | || Sbjct 2185 ACATTGTCGATGGTGTCGGAACTCTCCACTTCGAGCGTGATTGTCTTGCCCGTTAAGGTC 2244 Query 127097 TTTACAAAAATCTGCATG 127114 || ||||| || |||||| Sbjct 2245 TTAACAAAGATTTGCATG 2262 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || || |||||||||| ||| | || ||||| || ||||||||||| || | Sbjct 1579 CCTCCTCGCAACCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCCGCT 1638 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || ||||| | ||||| | |||||| || || ||| Sbjct 1639 AGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGT 1698 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || ||||||| | ||| | | || || | | || | ||||||| |||||| || Sbjct 1699 ATCCCTTCCTTGT-CTTGAATCTTAGCTTTCACATTATCAATTGTGTCCGAACTCTCAAC 1757 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | |||||||| || || || || ||||| |||||||| Sbjct 1758 CTCCAGGGTTATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1805 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | |||||||| || || || ||||| || | Sbjct 2263 CCACCACGGAGGCGGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCCGCA 2322 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| ||||| ||| ||||||| | |||||||| || || Sbjct 2323 AGAGTGCGGCCGTCCTCAAGCTGCTTTCCCGCGAAGATCAACCTTTGCTGATCTGGGGGA 2382 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| ||| || ||| | |||| |||| |||||| | |||||| || Sbjct 2383 ATGCCCTCCTTGTCTTGGATCTTAGCCTTTACGTTG-TCGATGGTGTCGGAACTCTCAAC 2441 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | || || || || || || || || || |||||||| Sbjct 2442 TTCAAGGGTAATTGTCTTCCCAGTTAGGGTCTTAACGAAGATCTGCAT 2489 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 126923 TCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAG 126982 || ||||| || ||||| ||| | | || || ||| || ||||| || |||||| | Sbjct 1843 TCCTTTTGGATGTTGTAGTCGGCAAGTGTTCGTCCATCATCGAGCTGCTTGCCAGCGAAA 1902 Query 126983 ATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGT 127042 ||||| | ||||||||| ||||| ||||||||||| || ||| || ||||| | Sbjct 1903 ATCAACCTCTGCTGATCTGGAGGAATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTG 1962 Query 127043 TCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 127102 || | ||| || | ||||| || || | || | || || || || | ||||| ||| Sbjct 1963 TCTATGGTATCGGAGCTCTCAACCTCAAGAGTAATGGTCTTTCCAGTTAAGGTTTTAACA 2022 Query 127103 AAAATCTGCATG 127114 || || |||||| Sbjct 2023 AAGATTTGCATG 2034 >seq66988 Length=1372 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || |||||||||||||| | | || || || || ||||| ||||| Sbjct 172 GTCGATTCCTTCTGAATATTGTAATCCGCAAGGGTTCGTCCGTCTTCGAGCTGCTTTCCG 231 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||||||||| || || || ||||| || ||| ||| |||| Sbjct 232 GCGAAGATCAGGCGCTGCTGATCGGGCGGAATTCCTTCCTTATCTTGGATCTTCGCCTTG 291 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||| || | ||||||||| |||| || | ||| || ||||| || || Sbjct 292 ACGTTG-TCGATGGTATCAGAACTCTCGACCTCGAGAGTGATCGTCTTTCCGGTTAGGGT 350 Query 127096 TTTTACAAAAATCTGCAT 127113 ||| || || |||||||| Sbjct 351 TTTCACGAAGATCTGCAT 368 >seq109031 Length=8095 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | | | ||||| ||| | || ||||| |||||||| ||||| || | Sbjct 304 TCCACCACGCAGCCTAAGCACCAGATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGC 245 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || | | ||| ||||||||||| || || | |||| | |||||| || || || Sbjct 244 CAAAGTCCTACCATCTTCTAGCTGTTTGCCGGCAAAAATCAGCCTCTGCTGGTCCGGTGG 185 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || || ||| | | |||| ||||||| ||||| || Sbjct 184 GATTCCCTCCTTGTCCTGTATCTTAGCCTTCACATTATCGATCGTGTCCGAGCTCTCCAC 125 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||| |||||||||| ||| || ||||| |||||||| Sbjct 124 TTCCAGCGTGATCGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 77 >seq117762 Length=309 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | || || || || || || |||||||| || Sbjct 28 CCACCACGGAGACGGAGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAATCAGCC 87 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| || || || ||||||| | |||||| || || || Sbjct 88 AAGGTGCGTCCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGGGGA 147 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||||| |||| || | ||||||| |||||||| Sbjct 148 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG-TCAATCGTGTCCGAGCTCTCGAC 206 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || |||||||| || || || || || || ||||| Sbjct 207 TTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 254 >seq95628 Length=1400 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || | ||| | || |||||| || | || ||||| || || || ||||||||| || Sbjct 233 CCTCCTCTTAACCTCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGCC 174 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| ||| ||| || ||||| || || || |||| || | ||||||||| || || Sbjct 173 AACGTACGACCATCCTCGAGCTGCTTCCCGGCAAAGATTAACCTCTGCTGATCCGGGGGA 114 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| || ||| ||| | | |||| ||||| | || || || Sbjct 113 ATCCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCGTGTCAGAGCTTTCAACC 54 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || |||||||| || || || || || ||||| Sbjct 53 TCCAAGGTGATGGTCTTCCCGGTCAGTGTCTTGACGAAGATTTGCAT 7 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| || || ||||| || | | || | ||| || | ||| || ||| Sbjct 431 GTGGACTCTTTCTGGATGTTGTAGTCAGCAAGGGTCCTTCCATCCTCCAACTGCTTCCCA 372 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | |||||| || || || || |||||||||||| || || |||| Sbjct 371 GCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGAATCTTAGCCTTG 312 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||| |||| ||||| || || | ||| | || || || ||||| || Sbjct 311 ACATTGTCAATGGTATCCGAGCTCTCCACCTCCAAGGTGATGGTCTTCCCTGTCAGTGTC 252 Query 127097 TTTACAAAAATCTGCATGGCT 127117 || ||||||||||||||| || Sbjct 251 TTGACAAAAATCTGCATGCCT 231 >seq111813 Length=4153 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||||||||| | | | || | ||| | || || |||||||| ||||||||||| | Sbjct 1763 TCCACCGCGAAGACAGAGGACAAGATGGAGAGTGGATTCTTTTTGGATATTGTAATCCGC 1822 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | ||| || ||||| ||||||||| ||||||| | |||||| || ||||| Sbjct 1823 AAGGGTTCTGCCATCATCGAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCAGGAGG 1882 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || |||||||| || || ||||| |||| || | |||||| | ||||| | Sbjct 1883 AATTCCTTCCTTGTCTTGAATCTTAGCCTTGACGTTG-TCAATGGTGTCGGAGCTCTCAA 1941 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||| ||| | || || || || || || || ||||| || ||||| Sbjct 1942 CCTCGAGGGTGATTGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCAT 1990 Score = 107 bits (118), Expect = 2e-18 Identities = 164/230 (71%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATC-GC 126944 |||||| || | |||| ||| | ||| | || || || |||||||| ||||||| || Sbjct 1328 TCCACCACGAAGACGCAGCACGAGATGAAGGGTGGATTCCTTTTGAATGCTGTAATCTGC 1387 Query 126945 CCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAG 127004 | | || | ||| || || || || ||||| ||| ||||| ||||| ||||| | Sbjct 1388 CTAGTGTTCTGCCATCTTCCAGTTGCTTCCCAGCAAAGAAAAATCGTTGCTGCTCGGGGG 1447 Query 127005 GTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCG 127063 | || || || || || |||||| ||||| ||||| ||| ||||| | || || Sbjct 1448 GGATCCCTTCTTTATCTTAGATTTTGGCCTTGACGTTGT-CGATAGTGTCTGAGCTTTCA 1506 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| | ||| | ||| ||||| | |||||||| || ||||||||||| Sbjct 1507 ACTTCAAGGGTTATCGTCTTGCCAGCAAGAGTTTTCACGAAAATCTGCAT 1556 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 126896 AATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGA 126955 || |||| ||||| ||| | || ||||| || || || ||||| ||| | | ||| | Sbjct 1110 AAACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCTAGCGTCCAG 1169 Query 126956 GAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCC 127015 ||| || ||||| || || || | |||| |||||||| || ||||| ||||| ||| Sbjct 1170 CCATCTTCGAGCTGCTTACCCGCAAATATCAGCCGCTGCTGGTCCGGAGGAATGCCTTCC 1229 Query 127016 TTGTCCGTGATTTTCTGCTTG-AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 |||||| ||| | | |||| | | || | ||||| | ||||| || || | || Sbjct 1230 TTGTCC-TGAATCTTGGCTTTCACATTGTCAATTGTGTCGGAGCTCTCCACCTCCAAAGT 1288 Query 127075 CACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || || |||| ||| || | ||||||||||| Sbjct 1289 GATGGTCTTTCCAGTCAAAGTCTTGATGAAAATCTGCAT 1327 >seq109834 Length=6695 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||||| | |||||| || ||||| || ||||||||| Sbjct 5 TCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGAATTCCCTCCTTG 64 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||||| ||||| || |||| ||| | Sbjct 65 TCCTGGATCTTAGCCTTGACGTTATCTATGGTGTCCGAGCTCTCCACCTCGAGGGTGATG 124 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||||||| || ||||| || || |||||||| Sbjct 125 GTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 159 >seq103400 Length=1682 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| |||||||| || || || || || ||||||||| |||||| ||| Sbjct 1 GCGAAGATCAGCCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCCTGAATTTTCGCCTTC 60 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | |||| ||||| | |||||||||||||| ||| | |||||||||||| || ||| Sbjct 61 ACAATGTCGATTGTGTCGGAACTCTCGACTTCGAGGGTGATCGTTTTGCCGGTTAGGGTT 120 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 121 TTCACGAAGATCTGCAT 137 >seq70367 Length=2979 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || |||||||| ||| || || ||| || ||||| || ||| Sbjct 482 GTGGACTCCTTCTGGATGTTGTAATCAGCCAAGGTACGGCCATCTTCCAGCTGCTTCCCA 423 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||| | ||||||||| || || || |||||||||||| || || ||| Sbjct 422 GCAAAGATCAACCTCTGCTGATCCGGTGGGATACCCTCCTTGTCCTGAATCTTGGCCTTT 363 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | ||||| | || || || || | ||| | ||||| ||||| || || Sbjct 362 ACATTGTCAATTGTGTCGGAGCTTTCAACCTCTAGGGTGATGGTTTTCCCGGTAAGGGTC 303 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 302 TTCACAAAAATCTGCAT 286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474775702886320