Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02]
121,993 sequences; 332,616,730 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq111813 118 1e-21
seq103400 104 2e-17
seq66988 95.1 1e-14
seq9177 95.1 1e-14
seq99159 91.5 1e-13
seq109031 89.7 5e-13
seq69221 89.7 5e-13
seq117762 86.0 6e-12
>seq111813
Length=4153
Score = 118 bits (130), Expect = 1e-21
Identities = 167/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| ||||| || | | || ||||| || || ||||| ||||||||||| |||||
Sbjct 1761 ATTCCACCGCGAAGACAGAGGACAAGATGGAGAGTGGATTCTTTTTGGATATTGTAATCC 1820
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| |||| | ||| || | || ||||| ||| | ||||| | |||||||| ||
Sbjct 1821 GCAAGGGTTCTGCCATCATCGAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCAGGA 1880
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
||||| ||||| || |||||||| || |||| || | || | ||||||||| |||
Sbjct 1881 GGAATTCCTTCCTTGTCTTGAATCTTAGCCTTGA-CGTTGTCAATGGTGTCGGAGCTCTC 1939
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341
|| ||||| || | || || || || || || || ||||| |||||||||
Sbjct 1940 AACCTCGAGGGTGATTGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATC 1991
Score = 105 bits (116), Expect = 6e-18
Identities = 165/232 (71%), Gaps = 3/232 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169
||||| || || || | || ||| ||||| || || ||||||||||| || | |||||
Sbjct 1326 ATTCCACCACGAAGACGCAGCACGAGATGAAGGGTGGATTCCTTTTGAATGCTGTAATCT 1385
Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229
|| | ||| | ||| |||| ||| || || || | | ||||||||||| || ||
Sbjct 1386 GCCTAGTGTTCTGCCATCTTCCAGTTGCTTCCCAGCAAAGAAAAATCGTTGCTGCTCGGG 1445
Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288
|| || ||||||||||||| ||||| |||| || | || | ||||| || |
Sbjct 1446 GGGGATCCCTTCTTTATCTTAGATTTTGGCCTTGA-CGTTGTCGATAGTGTCTGAGCTTT 1504
Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
| ||||| || || | ||| ||||| | |||||||| || ||||| |||||
Sbjct 1505 CAACTTCAAGGGTTATCGTCTTGCCAGCAAGAGTTTTCACGAAAATCTGCAT 1556
>seq103400
Length=1682
Score = 104 bits (114), Expect = 2e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263
||| | |||| || ||||||||||||||||| ||||| || || |||||||| ||
Sbjct 1 GCGAAGATCAGCCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCCTGAATTTTCGCCTTC 60
Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323
| || | ||||||||| |||||||||||| || | ||||||||||||||| |||
Sbjct 61 ACAATGTCGATTGTGTCGGAACTCTCGACTTCGAGGGTGATCGTTTTGCCGGTTAGGGTT 120
Query 45324 TTTACAAAAATTTGCAT 45340
|| || || || |||||
Sbjct 121 TTCACGAAGATCTGCAT 137
>seq66988
Length=1372
Score = 95.1 bits (104), Expect = 1e-14
Identities = 112/149 (75%), Gaps = 2/149 (1%)
Strand=Plus/Plus
Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260
|| ||| | ||||| || ||||| ||||||||||| || |||||||| ||||| |||
Sbjct 1 CCGGCGAAGATCAAACGCTGCTGATCCGGCGGAATCCCCTCTTTATCCTGAATCTTTGCC 60
Query 45261 TTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319
|||| || | || | |||||||| |||||| |||||||| | || || || |||||
Sbjct 61 TTGA-CGTTATCGATTGTGTCGGAGCTCTCGACCTCGAGAGTGATTGTCTTCCCCGTTAG 119
Query 45320 AGTTTTTACAAAAATTTGCATCGCGCGAC 45348
||||| || || || ||||| ||| ||
Sbjct 120 TGTTTTAACGAAGATCTGCATACCGCCAC 148
>seq9177
Length=5018
Score = 95.1 bits (104), Expect = 1e-14
Identities = 97/124 (78%), Gaps = 2/124 (2%)
Strand=Plus/Minus
Query 45219 TGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGT 45277
|||||||||||||| || ||||| || ||||| || || |||| || | || | |||
Sbjct 5016 TGCTGGTCCGGCGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGT 4958
Query 45278 GTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTG 45337
|||||| |||||| |||||||||| ||| || |||||||| ||||| || || || ||
Sbjct 4957 ATCGGAACTCTCGACCTCGAGAGTAATCGTCTTTCCGGTTAGGGTTTTGACGAAGATCTG 4898
Query 45338 CATC 45341
||||
Sbjct 4897 CATC 4894
>seq99159
Length=5808
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
||||| || | ||||| | ||| | || || || |||||||||||| || || |||
Sbjct 1804 ATTCCACCCCTTAGCCTGAGCACCAAGTGGAGAGTGCTTTCCTTTTGGATGTTGTAGTCG 1863
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| ||| || | || || || ||| | ||||| | ||||| || ||
Sbjct 1864 GCAAGTGTTCGTCCATCATCGAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGA 1923
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290
|||||||| || |||||||| || || |||| |||| ||| ||||| |||
Sbjct 1924 GGAATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCTATGGTATCGGAGCTCTCA 1983
Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||||| || || || |||| ||||| ||||| ||||||||
Sbjct 1984 ACCTCAAGAGTAATGGTCTTTCCAGTTAAGGTTTTAACAAAGATTTGCAT 2033
Score = 86.0 bits (94), Expect = 6e-12
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169
|| ||||| || | || |||||| ||||| || || || ||||| || ||||| || ||
Sbjct 1576 ATCCCTCCTCGCAACCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCC 1635
Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229
||| | || ||| || | || || || || | ||||| | |||||||||||
Sbjct 1636 GCT-AGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGG 1694
Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289
|| || ||||| || |||||||| || ||| | || | ||||| ||| |||
Sbjct 1695 GGGTATCCCTTCCTTGTCTTGAATCTTAGCTTTCACATTATCAATTGTGTCCGAACTCTC 1754
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || || || | |||||||| || || || || ||||| || |||||
Sbjct 1755 AACCTCCAGGGTTATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1805
>seq109031
Length=8095
Score = 89.7 bits (98), Expect = 5e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191
|| || || || || || ||||| || ||||||||||| | ||| | ||| ||
Sbjct 513 ACAAGGTGGAGAGTCGACTCCTTCTGAATATTATAATCAGCAAGGGTCCTTCCATCCTCG 454
Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251
| || || || || | || || | ||||||||||||||||||||||| || ||||||
Sbjct 453 AGCTGCTTCCCAGCAAAGATTAACCTCTGCTGGTCCGGCGGAATGCCTTCCTTGTCTTGA 394
Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311
|| ||| || | || | |||||| || ||| || || | ||| | ||| ||
Sbjct 393 ATCTTTGCCTTCACATTATCAATGGTGTCCGAGCTCTCCACCTCCAAAGTGATCGTCTTC 334
Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|| || ||||| || ||||| || |||||
Sbjct 333 CCCGTCAGAGTCTTCACAAAGATCTGCAT 305
>seq69221
Length=10640
Score = 89.7 bits (98), Expect = 5e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 45109 TTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT 45168
|| ||||||| | |||||||| || || || || |||||||| |||||||| ||||| |
Sbjct 6016 TTGTTCCTCCCCTAAGCCTCAAAACAAGGTGAAGTGTTGATTCTTTTTGGATGTTATAGT 5957
Query 45169 CGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228
| | ||| || ||| |||| |||||| || || |||| | | |||||||| |
Sbjct 5956 CTGCCAAAGTTCTACCATCTTCCAGTTGTTTACCAGCAAATATAAGCCTCTGCTGGTCAG 5897
Query 45229 GCGGAATGCCTTCTTTATCTTG 45250
| || || ||||||||||| ||
Sbjct 5896 GGGGGATACCTTCTTTATCCTG 5875
>seq117762
Length=309
Score = 86.0 bits (94), Expect = 6e-12
Identities = 159/231 (69%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170
|| || || ||||| | | || | ||| || || |||||||| ||||| || |||||
Sbjct 25 ATACCACCACGGAGACGGAGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAATCA 84
Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230
| ||| ||| || | || || || || | ||||| | |||||||||||
Sbjct 85 GCCAAGGTGCGTCCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGG 144
Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289
|||||||| || || || || || || |||| || | || | ||||| || |||
Sbjct 145 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATCGTGTCCGAGCTCTC 203
Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340
|||||| ||||| | || |||||||| || || || || || ||||||||
Sbjct 204 GACTTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451313934670280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |