Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq111813 118 1e-21 seq103400 104 2e-17 seq66988 95.1 1e-14 seq9177 95.1 1e-14 seq99159 91.5 1e-13 seq109031 89.7 5e-13 seq69221 89.7 5e-13 seq117762 86.0 6e-12 >seq111813 Length=4153 Score = 118 bits (130), Expect = 1e-21 Identities = 167/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| ||||| || | | || ||||| || || ||||| ||||||||||| ||||| Sbjct 1761 ATTCCACCGCGAAGACAGAGGACAAGATGGAGAGTGGATTCTTTTTGGATATTGTAATCC 1820 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | |||| | ||| || | || ||||| ||| | ||||| | |||||||| || Sbjct 1821 GCAAGGGTTCTGCCATCATCGAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCAGGA 1880 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || |||||||| || |||| || | || | ||||||||| ||| Sbjct 1881 GGAATTCCTTCCTTGTCTTGAATCTTAGCCTTGA-CGTTGTCAATGGTGTCGGAGCTCTC 1939 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||| || | || || || || || || || ||||| ||||||||| Sbjct 1940 AACCTCGAGGGTGATTGTCTTTCCAGTAAGTGTCTTAACAAAGATTTGCATC 1991 Score = 105 bits (116), Expect = 6e-18 Identities = 165/232 (71%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 ||||| || || || | || ||| ||||| || || ||||||||||| || | ||||| Sbjct 1326 ATTCCACCACGAAGACGCAGCACGAGATGAAGGGTGGATTCCTTTTGAATGCTGTAATCT 1385 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 || | ||| | ||| |||| ||| || || || | | ||||||||||| || || Sbjct 1386 GCCTAGTGTTCTGCCATCTTCCAGTTGCTTCCCAGCAAAGAAAAATCGTTGCTGCTCGGG 1445 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288 || || ||||||||||||| ||||| |||| || | || | ||||| || | Sbjct 1446 GGGGATCCCTTCTTTATCTTAGATTTTGGCCTTGA-CGTTGTCGATAGTGTCTGAGCTTT 1504 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || || | ||| ||||| | |||||||| || ||||| ||||| Sbjct 1505 CAACTTCAAGGGTTATCGTCTTGCCAGCAAGAGTTTTCACGAAAATCTGCAT 1556 >seq103400 Length=1682 Score = 104 bits (114), Expect = 2e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 ||| | |||| || ||||||||||||||||| ||||| || || |||||||| || Sbjct 1 GCGAAGATCAGCCGCTGCTGGTCCGGCGGAATTCCTTCCTTGTCCTGAATTTTCGCCTTC 60 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | || | ||||||||| |||||||||||| || | ||||||||||||||| ||| Sbjct 61 ACAATGTCGATTGTGTCGGAACTCTCGACTTCGAGGGTGATCGTTTTGCCGGTTAGGGTT 120 Query 45324 TTTACAAAAATTTGCAT 45340 || || || || ||||| Sbjct 121 TTCACGAAGATCTGCAT 137 >seq66988 Length=1372 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| | ||||| || ||||| ||||||||||| || |||||||| ||||| ||| Sbjct 1 CCGGCGAAGATCAAACGCTGCTGATCCGGCGGAATCCCCTCTTTATCCTGAATCTTTGCC 60 Query 45261 TTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAG 45319 |||| || | || | |||||||| |||||| |||||||| | || || || ||||| Sbjct 61 TTGA-CGTTATCGATTGTGTCGGAGCTCTCGACCTCGAGAGTGATTGTCTTCCCCGTTAG 119 Query 45320 AGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||||| || || || ||||| ||| || Sbjct 120 TGTTTTAACGAAGATCTGCATACCGCCAC 148 >seq9177 Length=5018 Score = 95.1 bits (104), Expect = 1e-14 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 45219 TGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGT 45277 |||||||||||||| || ||||| || ||||| || || |||| || | || | ||| Sbjct 5016 TGCTGGTCCGGCGGGATTCCTTCCTTGTCTTGGATCTTCGCCTTGA-CGTTGTCGATGGT 4958 Query 45278 GTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTG 45337 |||||| |||||| |||||||||| ||| || |||||||| ||||| || || || || Sbjct 4957 ATCGGAACTCTCGACCTCGAGAGTAATCGTCTTTCCGGTTAGGGTTTTGACGAAGATCTG 4898 Query 45338 CATC 45341 |||| Sbjct 4897 CATC 4894 >seq99159 Length=5808 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || | ||||| | ||| | || || || |||||||||||| || || ||| Sbjct 1804 ATTCCACCCCTTAGCCTGAGCACCAAGTGGAGAGTGCTTTCCTTTTGGATGTTGTAGTCG 1863 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || ||| | ||||| | ||||| || || Sbjct 1864 GCAAGTGTTCGTCCATCATCGAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGA 1923 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || |||||||| || || |||| |||| ||| ||||| ||| Sbjct 1924 GGAATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCTATGGTATCGGAGCTCTCA 1983 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||||| || || || |||| ||||| ||||| |||||||| Sbjct 1984 ACCTCAAGAGTAATGGTCTTTCCAGTTAAGGTTTTAACAAAGATTTGCAT 2033 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || ||||| || | || |||||| ||||| || || || ||||| || ||||| || || Sbjct 1576 ATCCCTCCTCGCAACCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCC 1635 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | || ||| || | || || || || | ||||| | ||||||||||| Sbjct 1636 GCT-AGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGG 1694 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTC 45289 || || ||||| || |||||||| || ||| | || | ||||| ||| ||| Sbjct 1695 GGGTATCCCTTCCTTGTCTTGAATCTTAGCTTTCACATTATCAATTGTGTCCGAACTCTC 1754 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | |||||||| || || || || ||||| || ||||| Sbjct 1755 AACCTCCAGGGTTATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1805 >seq109031 Length=8095 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||| || ||||||||||| | ||| | ||| || Sbjct 513 ACAAGGTGGAGAGTCGACTCCTTCTGAATATTATAATCAGCAAGGGTCCTTCCATCCTCG 454 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | || || | ||||||||||||||||||||||| || |||||| Sbjct 453 AGCTGCTTCCCAGCAAAGATTAACCTCTGCTGGTCCGGCGGAATGCCTTCCTTGTCTTGA 394 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || ||| || | || | |||||| || ||| || || | ||| | ||| || Sbjct 393 ATCTTTGCCTTCACATTATCAATGGTGTCCGAGCTCTCCACCTCCAAAGTGATCGTCTTC 334 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || ||||| || ||||| || ||||| Sbjct 333 CCCGTCAGAGTCTTCACAAAGATCTGCAT 305 >seq69221 Length=10640 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 45109 TTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAAT 45168 || ||||||| | |||||||| || || || || |||||||| |||||||| ||||| | Sbjct 6016 TTGTTCCTCCCCTAAGCCTCAAAACAAGGTGAAGTGTTGATTCTTTTTGGATGTTATAGT 5957 Query 45169 CGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 | | ||| || ||| |||| |||||| || || |||| | | |||||||| | Sbjct 5956 CTGCCAAAGTTCTACCATCTTCCAGTTGTTTACCAGCAAATATAAGCCTCTGCTGGTCAG 5897 Query 45229 GCGGAATGCCTTCTTTATCTTG 45250 | || || ||||||||||| || Sbjct 5896 GGGGGATACCTTCTTTATCCTG 5875 >seq117762 Length=309 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || | ||| || || |||||||| ||||| || ||||| Sbjct 25 ATACCACCACGGAGACGGAGGACCAAATGGAGGGTGGATTCCTTCTGGATGTTGTAATCA 84 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || || | ||||| | ||||||||||| Sbjct 85 GCCAAGGTGCGTCCATCCTCGAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCCGGG 144 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || || || || || |||| || | || | ||||| || ||| Sbjct 145 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATCGTGTCCGAGCTCTC 203 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| ||||| | || |||||||| || || || || || |||||||| Sbjct 204 GACTTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTGACGAAGATTTGCAT 254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451313934670280