Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq115592 159 4e-34 seq85463 158 2e-33 seq31467 156 5e-33 seq99465 134 2e-26 seq71831 123 3e-23 seq110764 116 5e-21 seq71989 84.2 3e-11 >seq115592 Length=218 Score = 159 bits (176), Expect = 4e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 6505 CATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAGAA 6564 |||||||||||||| |||||| |||||| || || | |||||||| || ||||| || Sbjct 4 CATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATTTGGGACCAAAA 63 Query 6565 ACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTGAA 6624 || ||||| |||||||| ||||| || || || |||| || || | ||| || ||| Sbjct 64 GCGGTTAGCAGTGACCATGGAATAAGTTTCTTCGGCTTGAGTTGGGTTAAAAGCACGGAA 123 Query 6625 AGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACCGTGAATAGC 6684 ||||||| |||||||||||||| |||||||| ||||| |||||||| |||||||| Sbjct 124 TGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACGGTAGCACCATGAATAGC 183 Query 6685 ACAGAGCAATGCTCCACCTAAGATACCTGCTAC 6717 || ||||| || | || || | ||| || || Sbjct 184 GCATAGCAAAGCAGCCCCCAATACACCAGCAAC 216 >seq85463 Length=6098 Score = 158 bits (174), Expect = 2e-33 Identities = 207/288 (72%), Gaps = 18/288 (6%) Strand=Plus/Minus Query 7529 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATG 7588 ||| ||||||| ||||| |||| | | || ||||||| |||| ||||| || Sbjct 4288 TCAACAGCAGCTAGGTCTAGAGAGCATTTATGAGCAT---------GCATAACTTCTATA 4238 Query 7589 CCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCA 7648 ||||| ||||||||||| | || |||| | || ||| ||||| |||| Sbjct 4237 CCAAGGTTAGCACGGTTGATGATATCAACCCACGACTTT-------GACTTTGACTATCA 4185 Query 7649 ATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGA 7708 | | ||| | ||| || |||||||| || || ||||| |||||| ||| | ||| || Sbjct 4184 ACTACGGATTTGTTAAAATTGAAACCATTTAGATTGAAGGCCATGACGCTGATACCTAG- 4126 Query 7709 GCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAG 7768 |||||||||| || || || || ||||| || || |||| |||||| | |||||| ||| Sbjct 4125 -CAGTGAACCAAATACCCACTACAGGCCAAGCAGCTAGGACGAAGTGTAACGAACGAGAG 4067 Query 7769 TTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGA 7816 |||| ||| ||| ||||||||||||| || |||||||| || ||| Sbjct 4066 TTGTGGAAACTAGCATATTGGAAGATCAATCGGCCAAAGTAACCATGA 4019 >seq31467 Length=18065 Score = 156 bits (172), Expect = 5e-33 Identities = 178/238 (75%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 7736 CATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAGATC 7795 || || || || |||||||| | |||||| ||||||||||| ||| |||||||||||| Sbjct 5246 CAAGCAGCTAGAAAGAAGTGTAACGAACGAGAGTTGTTGAAACTAGCATATTGGAAGATC 5305 Query 7796 AGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACCGAAC 7855 | || | |||||| || ||||| || ||||| || || || ||||| ||||||||| | Sbjct 5306 AATCGTCTAAAGTAACCATGAGCGGCTACGATATTATAAGTTTCTTCCTCTTGACCGGAT 5365 Query 7856 TTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAGGTTACA 7915 | ||||| | || || ||| || |||||||| | | || | ||| ||||| Sbjct 5366 CTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCCGATCAAACTAGAAGTTACC 5425 Query 7916 AGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCC-CAGC 7972 | ||||||||||| |||||||| || || || || || |||||||| ||||| |||| Sbjct 5426 AAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCGCAGC 5483 >seq99465 Length=4513 Score = 134 bits (148), Expect = 2e-26 Identities = 204/289 (71%), Gaps = 6/289 (2%) Strand=Plus/Minus Query 7791 AGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGAC 7850 |||||| || |||||||| || | ||||| ||||| || || | |||| | | |||| Sbjct 3249 AGATCAATCGGCCAAAGTAACCATATGCAGCTACGATATTATAAGCTTCTT-TCCCTGAC 3191 Query 7851 CGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAGG 7910 |||| || ||||| | || | ||| || ||||||| | | || | ||| | Sbjct 3190 CGAATTTGTAACCTTCATTAGCAGTTTCATTTTCTGTGGTTTACCTGATCAAACTAGAAG 3131 Query 7911 TTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCCA 7970 |||| | ||||||||||| |||||||| || || || | || ||||| || ||||| Sbjct 3130 TTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGTCGAATACACCCGCTACGCCTC 3071 Query 7971 GCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGA 8030 ||| || | ||||| || || || ||||| || | ||| |||| |||| |||||| Sbjct 3070 ACATATGAA-----TGCATAAGAATATTATGCTCAGCCTAGAATACAATCATGAAGTTGA 3016 Query 8031 ACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACC 8079 | |||| ||| || || |||||||| | ||||| ||| |||||||| Sbjct 3015 AAGTACAAGAAATTCCTGGAGGCATACCATCAGAAAAACTTCCTTGACC 2967 >seq71831 Length=3823 Score = 123 bits (136), Expect = 3e-23 Identities = 201/288 (70%), Gaps = 1/288 (0%) Strand=Plus/Plus Query 7792 GATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCTTCTTGACC 7851 ||||| || |||||||| || ||||| | |||| || || || |||| ||||||| Sbjct 670 GATCAATCGGCCAAAGTAACCATGAGCGGATGCGATATTATAAGTTTCTTTCTCTTGACT 729 Query 7852 GAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGAGAAGAGGT 7911 || | || || | || || ||| || ||||||| | | || | ||| || Sbjct 730 AAATCTGTATCCTTCATTAGCAGATTCATTTTCTGTGGTTTACCTGATCAAACTAGAAGT 789 Query 7912 TACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCGACGCCCAG 7971 | | | ||||||||||| ||||||| || || || | | |||| ||| |||| | Sbjct 790 TGCCAAGGAACCATGCATAACACTGAATAGGGAGCCGTCGTATACACTAGCTACGCTTAA 849 Query 7972 CATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATGTAGTTGAA 8031 ||| || || |||| ||| || ||| ||||||| || | || |||| |||| ||||||| Sbjct 850 CATATGAAATGGGTACATAAGAATG-TGTGCTCAGCCTAAAATACAATCATGAAGTTGAA 908 Query 8032 CGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACC 8079 |||| ||| || || ||||||||| | ||| | ||| |||||||| Sbjct 909 AGTACAAGAAATTCCTAGAGGCATACCATCAAAAAAACTTCCTTGACC 956 >seq110764 Length=2751 Score = 116 bits (128), Expect = 5e-21 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 7658 TGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAAC 7717 |||||||| ||||||||||| |||||||| ||||||||| | | ||| | |||||||||| Sbjct 1646 TGGTTGAAATTGAAACCGTTTAGGTTGAAAGCCATGGTGTTGATACCTAAAGCAGTGAAC 1587 Query 7718 CAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACG 7764 ||||| || || || ||||| || || ||||||||||| | |||||| Sbjct 1586 CAGATACCCACTACAGGCCAAGCAGCTAGGAAGAAGTGTAACGAACG 1540 >seq71989 Length=21768 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 10237 ACACAATC-GCTCGTGGGATAAGAAACACAGGTCAGAAGGAAACCAGCATCGATCTGGTC 10295 |||||||| ||| ||||| || || || || || || ||| | || | | |||||||| Sbjct 17442 ACACAATCCGCT-GTGGGGTAGGAGACGCAAGTGAGCAGGTACCCCTCCTTCATCTGGTC 17384 Query 10296 ATCATCAAGGAACGATTGATCGCTTTGATCTACCGTACCCGAGATGAGTTTGCCTGCACA 10355 ||||| || || || ||| ||||| |||| |||||| | | ||| |||||||| Sbjct 17383 TTCATCCAGAAAAGAACCATCCGACTGATCCACCGAACCCGACACCACTTTCCCTGCACA 17324 Query 10356 ACTCGAACAGGCACCAGCTCGGCACGAGTAGTTGAGGTCAATGCCTGCTTCTTCAGCAGC 10415 | || || || || || | ||||||||| || || | || ||| ||||||| Sbjct 17323 CGTGGAGCACGCCCCTGCCCTGCACGAGTAAGGCAGCTCCACTCCCGCTGACTCAGCAGA 17264 Query 10416 ATCCAGAATGTACTGATCGTCAG 10438 ||||||||||| ||| |||| Sbjct 17263 GTCCAGAATGTAACAATCATCAG 17241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621176114115920