Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq99159 125 8e-24 seq95628 118 1e-21 seq117762 116 4e-21 seq111813 116 4e-21 seq109031 111 2e-19 seq109834 96.9 4e-15 seq66988 95.1 1e-14 >seq99159 Length=5808 Score = 125 bits (138), Expect = 8e-24 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||||| || |||||||||||||| | || |||||| || ||||||||||| | | Sbjct 1579 CCTCCTCGCAACCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGTCCGCT 1638 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| | || |||||||||||||| || || ||||| | ||||||||| | || Sbjct 1639 AGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCGGGGGT 1698 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGA---TTCC 46543 | | |||||||| ||||| || | | | | ||||| ||| || Sbjct 1699 ATCCCTTCCTTGTCTTGAATCTTAGCTTTCACATTATCAATTGTGTC---CGAACTCTCA 1755 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || |||| || |||||||||||||| || || || |||||||| |||||| Sbjct 1756 ACCTCCAGGGTTATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCATT 1806 Score = 109 bits (120), Expect = 6e-19 Identities = 152/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| ||| || || || ||||| || | |||||||| | || ||| Sbjct 2053 ACCAGGTGGAGAGTAGACTCTTTCTGAATGTTGTAATCAGCAAGAGTGCGGCCATCTTCG 2112 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || ||||| | ||||||||| | || | || |||||||||| Sbjct 2113 AGCTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 2172 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCG---CTCGATTCCACATCCACCGTGATGGTT 46561 ||||| ||| | | | | |||||| ||| ||||| || | |||||| || Sbjct 2173 ATCTTGGCCTTAACATTGTCGATGGTGTCGGAACTC---TCCACTTCGAGCGTGATTGTC 2229 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| | || ||||||||||||||||| Sbjct 2230 TTGCCCGTTAAGGTCTTAACAAAGATTTGCAT 2261 Score = 105 bits (116), Expect = 8e-18 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||| || | || || ||||||||||| |||||||||| || || || | || || Sbjct 1824 CACCAAGTGGAGAGTGCTTTCCTTTTGGATGTTGTAGTCGGCAAGTGTTCGTCCATCATC 1883 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||| ||||| ||||| | |||||| || | || | || |||||| || Sbjct 1884 GAGCTGCTTGCCAGCGAAAATCAACCTCTGCTGATCTGGAGGAATGCCCTCCTTATCTTG 1943 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 |||||| ||||| | | | || || |||| || || || | || ||||| Sbjct 1944 GATCTTGGCCTTGACATTGTCTATGGTATCGGAGCTC---TCAACCTCAAGAGTAATGGT 2000 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || | |||||||||||||||||||| Sbjct 2001 CTTTCCAGTTAAGGTTTTAACAAAGATTTGCAT 2033 >seq95628 Length=1400 Score = 118 bits (130), Expect = 1e-21 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||||||||| | || ||||| |||| || |||||| ||||| ||||| |||| Sbjct 235 TGCCTCCTCTTAACCTCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGG 176 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || | || ||||||||||| ||||| || || || | |||||| || | | Sbjct 175 CCAACGTACGACCATCCTCGAGCTGCTTCCCGGCAAAGATTAACCTCTGCTGATCCGGGG 116 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | | |||||||||| |||||| ||| | | | | |||||| ||| || Sbjct 115 GAATCCCCTCCTTGTCCTGAATCTTCGCCTTCACATTGTCGATCGTGTCAGAGCT---TT 59 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || |||| |||||||| || || ||||| || || || ||||||||||| Sbjct 58 CAACCTCCAAGGTGATGGTCTTCCCGGTCAGTGTCTTGACGAAGATTTGCAT 7 >seq117762 Length=309 Score = 116 bits (128), Expect = 4e-21 Identities = 145/195 (74%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| || | | ||||| | || ||||||||||||||||| || Sbjct 64 TCCTTCTGGATGTTGTAATCAGCCAAGGTGCGTCCATCCTCGAGCTGCTTGCCGGCAAAG 123 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | || |||||||||| |||||| ||||| ||| Sbjct 124 ATCAACCTCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 182 Query 46523 G-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | |||||| |||| || || || | |||||||| ||||| || || || || Sbjct 183 GTCAATCGTGTCCGAGCTC---TCGACTTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTT 239 Query 46579 AACAAAGATTTGCAT 46593 || ||||||||||| Sbjct 240 GACGAAGATTTGCAT 254 >seq111813 Length=4153 Score = 116 bits (128), Expect = 4e-21 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||||| ||||||||| | || |||||| ||||| |||||||||| | Sbjct 1101 CCTCCTCTCAAACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCT 1160 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | | || ||||||||||| || || ||||||| ||||||||||| | || Sbjct 1161 AGCGTCCAGCCATCTTCGAGCTGCTTACCCGCAAATATCAGCCGCTGCTGGTCCGGAGGA 1220 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | || ||||||||| ||||| || | | | | ||||| |||| ||| Sbjct 1221 ATGCCTTCCTTGTCCTGAATCTTGGCTTTCACATTGTCAATTGTGTCGGAGCTC---TCC 1277 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || |||| |||||||| || || |||| || || | || || |||||| Sbjct 1278 ACCTCCAAAGTGATGGTCTTTCCAGTCAAAGTCTTGATGAAAATCTGCATT 1328 Score = 89.7 bits (98), Expect = 6e-13 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || |||||||||||||| || | || || | | || ||||||||||| || ||||| Sbjct 1800 TCTTTTTGGATATTGTAATCCGCAAGGGTTCTGCCATCATCGAGCTGCTTTCCAGCGAAG 1859 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | | |||||||| ||||| ||||| ||| Sbjct 1860 ATCAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTGTCTTGAATCTTAGCCTTGA-CGTT 1918 Query 46523 G-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | ||||| |||| || || || | ||||| || || || || || || || Sbjct 1919 GTCAATGGTGTCGGAGCTC---TCAACCTCGAGGGTGATTGTCTTTCCAGTAAGTGTCTT 1975 Query 46579 AACAAAGATTTGCAT 46593 ||||||||||||||| Sbjct 1976 AACAAAGATTTGCAT 1990 >seq109031 Length=8095 Score = 111 bits (122), Expect = 2e-19 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 |||||||||||| || ||||||||| || |||||||| | | ||| | | || || Sbjct 286 CACCAGATGCAAAGTCGACTCCTTTTGAATGTTGTAGTCCGCCAAAGTCCTACCATCTTC 227 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||| |||||||| || |||| | ||||||||| | || | | |||||||||| Sbjct 226 TAGCTGTTTGCCGGCAAAAATCAGCCTCTGCTGGTCCGGTGGGATTCCCTCCTTGTCCTG 167 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 ||||| ||| | | | | |||||| |||| ||||| |||| |||||| || Sbjct 166 TATCTTAGCCTTCACATTATCGATCGTGTCCGAGCTC---TCCACTTCCAGCGTGATCGT 110 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| |||| || || |||||||| ||||| Sbjct 109 CTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 77 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/196 (70%), Gaps = 6/196 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || ||||| || || | || || | | || ||||||||||| || || || Sbjct 496 CTCCTTCTGAATATTATAATCAGCAAGGGTCCTTCCATCCTCGAGCTGCTTCCCAGCAAA 437 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || || | ||||||||| | ||| | || |||||||| ||||| ||| | | Sbjct 436 GATTAACCTCTGCTGGTCCGGCGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTCACATT 377 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| |||| ||||| |||| ||||| || || |||||||| || || Sbjct 376 ATCAATGGTGTCCGAGCTC---TCCACCTCCAAAGTGATCGTCTTCCCCGTCAGAGTCTT 320 Query 46579 AACAAAGATTTGCATT 46594 |||||||| |||||| Sbjct 319 CACAAAGATCTGCATT 304 >seq109834 Length=6695 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/160 (74%), Gaps = 6/160 (4%) Strand=Plus/Plus Query 46437 CGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCT 46496 |||| |||||||||||||||||||| |||| | ||||||||| | || | | ||||| Sbjct 3 CGTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGAGGAATTCCCTCCT 62 Query 46497 TGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCG 46553 ||||| |||||| ||||| | | | ||||| |||| ||||| || | | Sbjct 63 TGTCCTGGATCTTAGCCTTGACGTTATCTATGGTGTCCGAGCTC---TCCACCTCGAGGG 119 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||||| ||||| || || ||||| || ||||| ||||| Sbjct 120 TGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 159 >seq66988 Length=1372 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/198 (72%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || |||||||| || | || || || |||| ||||||||||| |||||||| Sbjct 178 TCCTTCTGAATATTGTAATCCGCAAGGGTTCGTCCGTCTTCGAGCTGCTTTCCGGCGAAG 237 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| ||||||||| |||| ||| | | ||||| || ||||||| ||||| ||| Sbjct 238 ATCAGGCGCTGCTGATCGGGCGGAATTCCTTCCTTATCTTGGATCTTCGCCTTGA-CGTT 296 Query 46523 G-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | | || || ||| || || || | ||||| || || || || || ||||| Sbjct 297 GTCGATGGTATCAGAACTC---TCGACCTCGAGAGTGATCGTCTTTCCGGTTAGGGTTTT 353 Query 46579 AACAAAGATTTGCATTTT 46596 || ||||| ||||| || Sbjct 354 CACGAAGATCTGCATCTT 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564376460898360