Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq95628 93.3 3e-14 seq99159 91.5 1e-13 seq109031 84.2 2e-11 >seq95628 Length=1400 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| |||| || | ||| ||||| |||| ||| || || || || || |||||||| Sbjct 234 GCCTCCTCTTAACCTCAGCACCAAGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGGC 175 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| || |||| || | || |||||| |||| ||||| | ||||||||||| ||| Sbjct 174 CAACGTACGACCATCCTCGAGCTGCTTCCCGGCAAAGATTAACCTCTGCTGATCCGGGGG 115 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTC 39668 | || || ||||| | | | || | || | || |||| | ||||| | |||||| Sbjct 114 AATCCCCTCCTTGTC-CTGAATCTTCGCCTTCACATTGTCG--ATCGTGTCAGAGCTTTC 58 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| || || || || || || | || || |||||||| ||||| Sbjct 57 AACCTCCAAGGTGATGGTCTTCCCGGTCAGTGTCTTGACGAAGATTTGCAT 7 >seq99159 Length=5808 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||||||| |||| |||| ||| | ||| || || || ||||| || | Sbjct 1575 CATC-CCTCCTCGCAACCGCAACACCAGATGAAGAGTCGACTCCTTCTGAATATTGTAGT 1633 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | | |||| |||| || | || || || ||||||| || | |||||| |||| Sbjct 1634 CCGCTAGAGTGCGTCCATCCTCGAGCTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCCG 1693 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 ||||| ||||| ||||| || || ||| | | | | |||||| | || | Sbjct 1694 GGGGTATCCCTTCCTTGTCTTGAATCTTAGCTTTCACATTATCAATTGTGTCCGAACTCT 1753 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || |||| || || ||||| ||||| | || || || ||||||||||| Sbjct 1754 CAACCTCCAGGGTTATGGTTTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 1805 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| | ||| || |||||||| | || || || ||||| || || || || Sbjct 2491 CCACCTCTGAGACGAAGGACCAAATGGAGGGTAGACTCCTTCTGTATGTTGTAGTCTGCA 2550 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | |||||| || |||| || || | ||||| |||| || Sbjct 2551 AGGGTGCGACCATCTTCGAGTTGTTTGCCCGCAAAGATCAACCTTTGCTGGTCCGGAGGG 2610 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| ||||| ||||| || | | | | |||||||| ||||||||| Sbjct 2611 ATCCCTTCCTTGTCCTGGATTTTAGCCTTTACGTTATCGATTGTGTCTGAGCTTTCCACC 2670 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || ||||| || || |||| ||||| |||||||||||||| Sbjct 2671 TCGAGGGTGATTGTCTTGCCTGTTAGGGTTTTCACGAAGATCTGCAT 2717 >seq109031 Length=8095 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 39486 ATCATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATA 39545 |||||| || || || | || || || | || | ||| || || || |||||||| Sbjct 538 ATCATCACCACCACGAAGGCGAAGAACAAGGTGGAGAGTCGACTCCTTCTGAATATTATA 479 Query 39546 ATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATC 39605 ||| || | | | |||| || | || ||||| |||| ||||| | |||||| || Sbjct 478 ATCAGCAAGGGTCCTTCCATCCTCGAGCTGCTTCCCAGCAAAGATTAACCTCTGCTGGTC 419 Query 39606 CGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCT 39665 || || | |||||| ||||| || ||| || | | | | ||||| | ||| Sbjct 418 CGGCGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTCACATTATCAATGGTGTCCGAGCT 359 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| |||||||| || || || ||||| | ||| || || ||||||||||| Sbjct 358 CTCCACCTCCAAAGTGATCGTCTTCCCCGTCAGAGTCTTCACAAAGATCTGCAT 305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346853134460969