Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq117762 118 1e-21 seq111813 114 1e-20 seq99159 107 2e-18 seq109834 102 8e-17 seq95628 91.5 1e-13 seq70367 86.0 6e-12 >seq117762 Length=309 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| |||||||| | || |||||| | | Sbjct 254 ATGCAAATCTTCGTCAAGACCCTTACCGGCAAGACCATCACTCTTGAAGTCGAGAGCTCG 195 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || |||| | || | || |||| ||||| ||||| |||||| | ||||| Sbjct 194 GACACGATTGACAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 136 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || ||||| ||||| || || | |||||| | || ||||| Sbjct 135 GCAGAGGTTGATCTTTGCCGGCAAGCAGCTCGAGGATGGACGCACCTTGGCTGATTACAA 76 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| | || || |||||||| || ||| Sbjct 75 CATCCAGAAGGAATCCACCCTCCATTTGGTCCTCCGT 39 >seq111813 Length=4153 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||| | || || | || || || |||||||| | || || ||| | | Sbjct 1328 AATGCAGATTTTCATCAAGACTTTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGCTC 1269 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | |||| || || | ||||| || || ||||| | ||||| Sbjct 1268 CGACACAATTGACAATGTGAAAGCCAAGATTCAGGACAAGGAAGGCATTCCTCCGGACCA 1209 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||||| || | ||||| || ||||| || || | | || || ||||||||| Sbjct 1208 GCAGCGGCTGATATTTGCGGGTAAGCAGCTCGAAGATGGCTGGACGCTAGCCGACTACAA 1149 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| || ||| ||||||||||||||||||| || Sbjct 1148 CATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGTTTGAGAGGAGG 1101 >seq99159 Length=5808 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| || || ||||| || |||||| |||| || || | | Sbjct 2717 ATGCAGATCTTCGTGAAAACCCTAACAGGCAAGACAATCACCCTCGAGGTGGAAAGCTCA 2658 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | ||||||| ||||| || || || || | ||||| Sbjct 2657 GACACAATCGATAACG-TAAAGGCTAAAATCCAGGACAAGGAAGGGATCCCTCCGGACCA 2599 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||||||||||| || || || | |||||||| |||||||| Sbjct 2598 GCAAAGGTTGATCTTTGCGGGCAAACAACTCGAAGATGGTCGCACCCTTGCAGACTACAA 2539 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| | || || |||||||| || ||| | ||||| || Sbjct 2538 CATACAGAAGGAGTCTACCCTCCATTTGGTCCTTCGTCTCAGAGGTGG 2491 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || || ||||||||||||||||| ||| | || || ||| | Sbjct 1806 AATGCAGATCTTTGTCAAGACCCTCACGGGCAAAACCATAACCCTGGAGGTTGAGAGTTC 1747 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | |||| || || | ||||| || || || ||| | ||||| Sbjct 1746 GGACACAATTGATAATGTGAAAGCTAAGATTCAAGACAAGGAAGGGATACCCCCGGACCA 1687 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| || ||||| ||||| || || | ||||| || |||||||| Sbjct 1686 GCAGAGGTTGATTTTTGCTGGCAAGCAGCTCGAGGATGGACGCACTCTAGCGGACTACAA 1627 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| |||| || ||| ||||| |||| ||| |||| || Sbjct 1626 TATTCAGAAGGAGTCGACTCTTCATCTGGTGTTGCGGTTGCGAGGAGG 1579 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || || || ||||| || | || || ||| | || Sbjct 2033 ATGCAAATCTTTGTTAAAACCTTAACTGGAAAGACCATTACTCTTGAGGTTGAGAGCTCC 1974 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| || || ||||| ||||| | || || Sbjct 1973 GATACCATAGACAATGTCAAGGCCAAGATCCAAGATAAGGAGGGCATTCCTCCAGATCAG 1914 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | |||| ||| ||||| ||||| || || | || || || |||||||||| Sbjct 1913 CAGAGGTTGATTTTCGCTGGCAAGCAGCTCGATGATGGACGAACACTTGCCGACTACAAC 1854 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 |||||||||||| || || || |||||||| Sbjct 1853 ATCCAAAAGGAAAGCACTCTCCACTTGGTGCT 1822 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || || || ||| | || || ||| || Sbjct 2489 ATGCAGATCTTCGTTAAGACCCTAACTGGGAAGACAATTACCCTTGAAGTTGAGAGTTCC 2430 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| |||||| | || || Sbjct 2429 GACACCATCGACAACG-TAAAGGCTAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCA 2371 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | |||||| || ||||| || |||| ||||| || |||||||| Sbjct 2370 GCAAAGGTTGATCTTCGCGGGAAAGCAGCTTGAGGACGGCCGCACTCTTGCGGACTACAA 2311 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| ||||| | || || || ||||| || || Sbjct 2310 CATCCAGAAGGAGTCTACTCTCCACTTGGTCCTCCG 2275 >seq109834 Length=6695 Score = 102 bits (112), Expect = 8e-17 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| ||||| ||||| ||||||||| |||| || ||| | | Sbjct 159 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGAGCTCG 100 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||||||||| | ||||| Sbjct 99 GACACCATAGATAACG-TCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCTCCGGACCA 41 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACG 38400 ||| |||| || | ||| ||||| ||||| || |||| Sbjct 40 GCAGAGGCTGATCTTCGCCGGCAAGCAGCTCGAGGACG 3 >seq95628 Length=1400 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || || ||||||||| | || || || | | Sbjct 7 ATGCAAATCTTCGTCAAGACACTGACCGGGAAGACCATCACCTTGGAGGTTGAAAGCTCT 66 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || || | ||||| ||||| |||||| | || || Sbjct 67 GACACGATCGACAATGTGAAGGCGAAGATTCAGGACAAGGAGGGGATTCCCCCGGATCAG 126 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || || ||||| || || | || || | ||| |||||| Sbjct 127 CAGAGGTTAATCTTTGCCGGGAAGCAGCTCGAGGATGGTCGTACGTTGGCCGATTACAAC 186 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| ||||||||| | || ||||| ||| Sbjct 187 ATCCAGAAGGAGTCCACCCTGCACTTGGTGCTGAGGTTAAGAGGAGGC 234 >seq70367 Length=2979 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||||||| | || |||||| | || Sbjct 58 ATGCAGATCTTTGTCAAGACCCTTACAGGGAAGACCATCACCCTTGAGGTCGAGAGCTCC 117 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || |||| ||||| || || ||||| | || || Sbjct 118 GACACTATTGACAACG-TGAAGGCCAAGATCCAGGACAAGGAAGGCATTCCACCGGATCA 176 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || || ||||| || || | |||||| | |||||||| Sbjct 177 GCAGAGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGCACCTTGGCGGACTACAA 236 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||| || || || |||| |||| ||||| ||| Sbjct 237 CATTCAGAAAGAGTCGACCTTGCACTTGGTCCTG 270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499410080245120