Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq53764 105 8e-18 >seq53764 Length=14654 Score = 105 bits (116), Expect = 8e-18 Identities = 229/335 (68%), Gaps = 6/335 (2%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGT-TTCGTTATCAAA 15976 ||||| |||||| | || || || || || | |||| ||||| || ||| | ||||| Sbjct 10859 TCAAGAATATCAGCACGGTTAGTAGCTGCAACCACAATTATACCAGTATTCCCT-TCAAA 10917 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 ||||||||| |||||||| ||||| || | || ||||||| ||||||||| || Sbjct 10918 ACCATCCATTTCTGTCAACAGCTGATTTAGTGTCTGTTCCCTTTCATCATTTCCTCCACC 10977 Query 16037 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG 16096 | ||| | | | ||| || || |||||||| ||||||| || | || ||||| Sbjct 10978 AATACCTGTTCCTCTTTGACGCCCAACAGCATCAATTTCATCAACAAATATAATACATGG 11037 Query 16097 TTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAA 16155 | |||||| | | ||| ||| ||||| || || || || || ||||| || | Sbjct 11038 TGCATTTTCCTTTGCCTTCTTGAAA-AGATCACGGACCCGAGAAGCACCAACACCGACGA 11096 Query 16156 ACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCA 16214 ||||||| ||||| | | | ||| || | || ||||| ||| | |||||| ||| Sbjct 11097 ACATCTCAACAAACTCGGAACCTGAA-ATAGAGAAAAAGGGAACACCTGCTTCACCAGCA 11155 Query 16215 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || ||| || | ||||| || || || || Sbjct 11156 ATAGCCTTGGCTAGCAAGGTCTTCCCAGTGCCAGG 11190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619795822154960