Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq53764 111 2e-19 seq50788 104 3e-17 seq103549 95.1 1e-14 >seq53764 Length=14654 Score = 111 bits (122), Expect = 2e-19 Identities = 228/334 (68%), Gaps = 4/334 (1%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT-TTCATTATCAAA 9283 ||||| |||||| | || || || || || | |||| ||||| || ||| | ||||| Sbjct 10859 TCAAGAATATCAGCACGGTTAGTAGCTGCAACCACAATTATACCAGTATTCCCT-TCAAA 10917 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| |||||||| || || || | || ||||||| ||||||||| || Sbjct 10918 ACCATCCATTTCTGTCAACAGCTGATTTAGTGTCTGTTCCCTTTCATCATTTCCTCCACC 10977 Query 9344 ACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGG 9403 | ||| | | | ||| || || |||||||| ||||||| || | ||||||||| Sbjct 10978 AATACCTGTTCCTCTTTGACGCCCAACAGCATCAATTTCATCAACAAATATAATACATGG 11037 Query 9404 TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAA 9463 | |||||| || | | || ||||| || |||| || || ||||| || || Sbjct 11038 TGCATTTTCCTTTGCCTTCTTGAAAAGATCACGGACCCGAGAAGCACCAACACCGACGAA 11097 Query 9464 CATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAA 9522 |||||| ||||| | | | ||| || | || ||||| ||| | |||||| |||| Sbjct 11098 CATCTCAACAAACTCGGAACCTGAA-ATAGAGAAAAAGGGAACACCTGCTTCACCAGCAA 11156 Query 9523 TGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | || ||| || | ||||| || || || || Sbjct 11157 TAGCCTTGGCTAGCAAGGTCTTCCCAGTGCCAGG 11190 >seq50788 Length=838 Score = 104 bits (114), Expect = 3e-17 Identities = 230/337 (68%), Gaps = 10/337 (3%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCAA 9282 || || ||||| | || || ||||| || | |||| || || || ||| || ||| Sbjct 486 TCGAGAATATCTGCACGGTTAGTCGCTGCAACAACAATTATGCCAGTATTTCCTT--CAA 543 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 | |||||||| |||||||| || ||||| | || || |||| |||||| || || || Sbjct 544 AGCCATCCATTTCTGTCAAGAGCTGGTTCAAGGTCTGCTCCCTTTCATCGTTTCCTC-CA 602 Query 9343 TACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | | || | | | ||| || || |||||||||||||||| || ||||| || Sbjct 603 C-CGATTCCGGTTCCTCTTTGACGCCCAACCGCATCAATCTCATCAACAAACACAATGCA 661 Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460 || |||||| ||| | | || || || || || | | ||| || || ||||| Sbjct 662 GGGAGCATTTTCCTTGGCTTTCTTGAAAAGGTCACGGACTCGTGAGGCACCAACTCCAAC 721 Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519 ||||||||| ||||| | | | ||| || | || ||| || ||| | |||||| | Sbjct 722 AAACATCTCAACAAACTCCGAACCTGAA-ATGGAGAAGAATGGAACACCTGCTTCACCAG 780 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 |||| ||| ||| || || ||||| || ||||| || Sbjct 781 CAATCGCTTTGGCTAGCAGGGTCTTCCCAGTACCGGG 817 >seq103549 Length=14649 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 106247 GAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 106306 ||||||||||| || ||| ||||| || ||||||||||| ||||| | || Sbjct 9243 GAATCAAATGCCATGCCTAGCAAGATAAAGGTGTCAGCGAGACCTTGTACACCAATTCCT 9184 Query 106307 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCA 106366 || ||||| || |||||||||||| || ||||| ||||| ||||||||||| ||| Sbjct 9183 ATTGGTCTATGACGCATATTAGACCTTTTTGCAGTTTCAACAGGATAAAAATTGACATCA 9124 Query 106367 ATGACTCGGTTTAGATTTTTGGTAACAATC 106396 || | | ||| || ||| | ||||||||| Sbjct 9123 ATTATTTTGTTAAGGTTTGTAGTAACAATC 9094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589081130903320