Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ocimum_20tenuiflorum_20[genbank_20GCA_5F001278415.1_202015-09-02] 121,993 sequences; 332,616,730 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq85463 138 1e-27 seq115592 136 5e-27 seq31467 132 6e-26 seq110764 107 2e-18 >seq85463 Length=6098 Score = 138 bits (152), Expect = 1e-27 Identities = 202/287 (70%), Gaps = 18/287 (6%) Strand=Plus/Plus Query 180453 CATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTT 180512 ||||| ||||| || || |||||||||| ||||| ||| ||||||| ||||| | Sbjct 4020 CATGGTTACTTTGGCCGATTGATCTTCCAATATGCTAGTTTCCACAACTCTCGTTCGTTA 4079 Query 180513 CACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGC 180572 |||||| |||| || || |||||||| || || || |||||||||| || || | ||| Sbjct 4080 CACTTCGTCCTAGCTGCTTGGCCTGTAGTGGGTATTTGGTTCACTG--CTAGGTATCAGC 4137 Query 180573 ACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGT 180632 |||||| ||||| || || |||||||| || ||| | ||| | ||||| ||||| || Sbjct 4138 GTCATGGCCTTCAATCTAAATGGTTTCAATTTTAACAAATCCGTAGTTGATAGTCAAAGT 4197 Query 180633 CGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATG 180692 | || | |||| || | ||||||| ||| || ||||| ||||||||| Sbjct 4198 C-------AAAGTCGTGGGTTGATATCATCAACCGTGCTAACCTTGGTATAGAAGTTATG 4250 Query 180693 CACGAGCGTAATGCTCACAACTTCCCACTTGACCTGGCAGCTGCTGA 180739 | ||||||| || | | | || ||||| || |||| ||| Sbjct 4251 C---------ATGCTCATAAATGCTCTCTAGACCTAGCTGCTGTTGA 4288 >seq115592 Length=218 Score = 136 bits (150), Expect = 5e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 181982 GTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAAT 182041 ||||||||| | |||| | || || || | || ||||| |||| ||||| || ||| Sbjct 216 GTTGCTGGTGTATTGGGGGCTGCTTTGCTATGCGCTATTCATGGTGCTACCGTAGAAAAT 157 Query 182042 ACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGAA 182101 ||| | | | |||| ||||| |||||||| ||| || || | ||||||||| Sbjct 156 ACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCC 97 Query 182102 GAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCG 182161 |||||||| ||||| ||||| || || |||||||| ||||| || ||||| || |||| Sbjct 96 GAAGAAACTTATTCCATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCT 37 Query 182162 TTTAGCAATAAGAGGTGGTTGCATTTCTTTATG 182194 ||| |||||| | ||||| |||||||||||| Sbjct 36 TTTTCCAATAAACGTTGGTTACATTTCTTTATG 4 >seq31467 Length=18065 Score = 132 bits (146), Expect = 6e-26 Identities = 173/238 (73%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 180296 GCTG-GGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCACGGTTCACTGG 180354 |||| || ||||| ||||| |||||||| || || ||| || ||||| ||||| ||| Sbjct 5483 GCTGCGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGG 5424 Query 180355 TTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGT 180414 | || ||| || | | |||||||| |||| ||| || || | ||||||| | Sbjct 5423 TAACTTCTAGTTTGATCGGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGAT 5364 Query 180415 TTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGA 180474 |||||||| ||||| || || || ||||| || || ||||| ||||| | || ||| Sbjct 5363 CCGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTACTTTAGACGATTGA 5304 Query 180475 TCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATG 180532 ||||||| ||||| ||||||||||| ||||| | |||||||| || || || || Sbjct 5303 TCTTCCAATATGCTAGTTTCAACAACTCTCGTTCGTTACACTTCTTTCTAGCTGCTTG 5246 >seq110764 Length=2751 Score = 107 bits (118), Expect = 2e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 180504 CGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTG 180563 ||||| | ||||||||||| || || |||||||| || || |||||||||||||| | Sbjct 1540 CGTTCGTTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTA 1599 Query 180564 GGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCA 180610 || | | ||||||||| |||||||| ||||||||||| |||||||| Sbjct 1600 GGTATCAACACCATGGCTTTCAACCTAAACGGTTTCAATTTCAACCA 1646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 609465998289720